Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1268 ATGCCTTCATCTCTAAGAAACTCCTTCTCTTCTTCCAATATCCTCCTTATCTCTATCACCTTAATCCTTTCAATAAACTCTCTAATCCACCCTTCTTCTTGTTCCTCCATTCTTGAACAGACTCAAGCTCTTCTCACATGGAAAAACACTCTAAACAGCTCAACCAATGCATTACAATCATGGAACCCTTCCGACTCGAGCCCCTGCAATTGGCTCGGAATCGTCTGCAACTCGAACGGAGATGTCATAGAAATAACCTTGAATTCATTAGACTTGCAAGGCTCCTTGCCTTCAAATTTCCAACCTCTTGTCTTCTTGAAAACTCTTACCATATCTTCCACCAATCTTTCCGGACCGATCCCAAAACAATTCGGACAGTATTTCGAACTGAGTTTCCTCGATCTTAGTGACAATTCTCTCTCAGGTCAAATCCCGGATGAGCTATGCCAGCTAAGCAAGCTTGAGGCTTTGTATCTCAACACAAACTACTTTGAAGGAGAGATTCCTTCGCCTCTAGGGAATCTTTCGAATCTTCTGCATCTAACATTGTATGATAATGAACTTGGAGGCTGGCTTCCGAAGAGTATTGGATCACTGAGAAGATTGCAGACTTTAAGAGCAGGTGGGAATAAAGACTTGAAAGGAGAGCTTCCATGGGAGATTGGAAACTGTTCGGATTTACTCATGTTAGGCCTGGCCGAAACGAGTATTTCGGGCGCTCTTCCTTCTTCAATCGGAATGCTGAAGAGAATCCAAACCATAGCCATTTACACTTCTCTATTATCTGGTCCAATCCCGGAAGAAATCGGAAACTGCTGCGATTTGCAGAATCTCTACTTGTACCAGAATTCAGTTTCGGGTCCGATCCCGAAGACAATCGGAGAGCTTAGCAAGCTCAAACGATTGCTTTTATGGCAAAACAGCTTGGTGGGTTCCATCCCCGATGAGCTCGGGAGGTGTAAAGAGCTTAGCGTTATTGATTTGTCGGAAAATCTTCTAACGGGAAGCATACCGAAAAGTCTCGCTCAGTTGTCGAATCTTGAGGAACTTCAACTTAGTGTTAATCAGTTGTCAGGTACTATTCCTTCTGAAATCACTGACTGTGCTTCTCTGACTCATCTTGAAGTAGACAACAATAATATTTCGGGAGAAATTCCAGTCCAAATCGGAAACTTGAAGAGCTTGACTCTCTTCTTCGCCTGGCAGAACAATCTAACCGGAAATATTCCGGAAAGTATCTCTAACTGTCAGGATCTTCAAGCTATTGATCTGTCTTATAACAATCTGATTGGTGAGATTCCAAAAGGGATTTTCGGGTTGAAGAATCTAACCAAGATTCTTCTAATCTCGAATGGTTTATCCGGATTCATACCTTTTGAGGTCGGAAACTGTACGAATCTTTACCGGCTCCGAGTGAACAATAATCGGCTTGGAGGTACTATTCCATCCGAAATTGGAAACTTGAAAAGCTTGAATTTTTTTGACATGAGCAATAACCGTTTTGTAGGACCCATTCCTATATCTATTTCCGGATGTGAAGAGCTTGAGTTTCTTGACCTCCATTCAAATGGGATCTCCGGCTCATTGCCCTATTCACTCCCGAAAAGCCTCCAATTTCTAGACATTTCCGATAATAGACTTTCCGGTTCACTTGTCCCTAGCATTGGTTCTTTAACTGAATTAACTAAACTCAACTTGGGAAATAACCAACTTTCCGGTTCGATCCCTTTTGAGATTCTTTCTTGTAGCAAGCTCCAACTTTTAGACCTCGGAGGCAATGGCTTTTCCGGTCAAATCCCTAGTGAATTGTGTCAACTTACCTCTCTAGAAATCTCGCTCAATCTAAGCTGTAACCAACTTTCTGGCCCAATCCCGCCTCGATTTTCCGATCTAAGCAAGTTGGGAACTATTGACCTCTCCCACAACAAACTTTCTGGAAACTTGACCACTCTTTCTGGCCTTCAAAACCTCGTAAATCTCAACATCTCATACAACGAATTCTCCGGTGAATTACCCAACACCCCATTCTTTCAGAAGCTGCCGATGAGTGACCTCACTTCAAACAAAGGTCTCTACATATCAGGGGCGGTTGTTACTCCGGCCGATAAGATGGGCTCTACTGACCGCAACAGATCCACTATGAGACTAGCGTTGCCGATCCTAGTAAGCATCAGTGCAGTACTAATTCTTCTTGCTGTTTACATGCTAGTCCGGATCCGTATATCAAACAAGCTTCTAGCCAATGATGACAGTTGGGAAGTTACTTTGTATCAAAAGCTTGATTTTTCAATCAATGACATTCTTCAAAACTTGACGTCATCCAATGTGGTCGGGACCGGAAGCTCCGGGGTTGTATACAGAGTAACAATCCCAAACAGTCAAACACTTGCGGTAAAGAAAATGTGGTCAACCGAAGATTCCGGGGCATTTGGTTCGGAAATCCAGACACTAAGTTCGATCCGACACAAGAATGTTATAAGGCTCTTAGGTTGGGGATCGAACCGGCATTTGAAACTGTTGTTTTACGATTATCTCTCTAATGGAAGTTTGAGCTCGTTACTACATGGAGCGAGCAAGTCCGGAGCTGAATGGGAAGCTCGGTATGATGTTATCTTAGGCATTGCTCATGCACTTGCTTACCTACATCATGACTGTGTTCCTCCTATCCTACATGGTGATGTCAAATCCATGAACGTTTTGCTTGGTCCTGGATTTCAACCTTATCTTGCAGATTTCGGGTTGGCTCGGATTGTTACCAAAAATGATGATGGTGATTCTGGTACACCATGTCAAAAGAAACCTCAACTTGCCGGTTCTTAA 2820 43.09 MPSSLRNSFSSSNILLISITLILSINSLIHPSSCSSILEQTQALLTWKNTLNSSTNALQSWNPSDSSPCNWLGIVCNSNGDVIEITLNSLDLQGSLPSNFQPLVFLKTLTISSTNLSGPIPKQFGQYFELSFLDLSDNSLSGQIPDELCQLSKLEALYLNTNYFEGEIPSPLGNLSNLLHLTLYDNELGGWLPKSIGSLRRLQTLRAGGNKDLKGELPWEIGNCSDLLMLGLAETSISGALPSSIGMLKRIQTIAIYTSLLSGPIPEEIGNCCDLQNLYLYQNSVSGPIPKTIGELSKLKRLLLWQNSLVGSIPDELGRCKELSVIDLSENLLTGSIPKSLAQLSNLEELQLSVNQLSGTIPSEITDCASLTHLEVDNNNISGEIPVQIGNLKSLTLFFAWQNNLTGNIPESISNCQDLQAIDLSYNNLIGEIPKGIFGLKNLTKILLISNGLSGFIPFEVGNCTNLYRLRVNNNRLGGTIPSEIGNLKSLNFFDMSNNRFVGPIPISISGCEELEFLDLHSNGISGSLPYSLPKSLQFLDISDNRLSGSLVPSIGSLTELTKLNLGNNQLSGSIPFEILSCSKLQLLDLGGNGFSGQIPSELCQLTSLEISLNLSCNQLSGPIPPRFSDLSKLGTIDLSHNKLSGNLTTLSGLQNLVNLNISYNEFSGELPNTPFFQKLPMSDLTSNKGLYISGAVVTPADKMGSTDRNRSTMRLALPILVSISAVLILLAVYMLVRIRISNKLLANDDSWEVTLYQKLDFSINDILQNLTSSNVVGTGSSGVVYRVTIPNSQTLAVKKMWSTEDSGAFGSEIQTLSSIRHKNVIRLLGWGSNRHLKLLFYDYLSNGSLSSLLHGASKSGAEWEARYDVILGIAHALAYLHHDCVPPILHGDVKSMNVLLGPGFQPYLADFGLARIVTKNDDGDSGTPCQKKPQLAGS 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 9990878 9993697 + Conep15aG0129700.1 Cone15ag1268 454396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1268 939 FunFam Leucine-rich receptor-like protein kinase family protein 339 611 - -
Cone15ag1268 939 Pfam Leucine Rich repeats (2 copies) 535 572 IPR025875 -
Cone15ag1268 939 Gene3D Ribonuclease Inhibitor 192 292 IPR032675 -
Cone15ag1268 939 Pfam Leucine rich repeat 298 357 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 PRINTS Leucine-rich repeat signature 631 644 - -
Cone15ag1268 939 PRINTS Leucine-rich repeat signature 130 143 - -
Cone15ag1268 939 Gene3D Ribonuclease Inhibitor 293 369 IPR032675 -
Cone15ag1268 939 SUPERFAMILY RNI-like 385 673 - -
Cone15ag1268 939 Gene3D Ribonuclease Inhibitor 370 611 IPR032675 -
Cone15ag1268 939 Gene3D Ribonuclease Inhibitor 612 698 IPR032675 -
Cone15ag1268 939 ProSiteProfiles Protein kinase domain profile. 771 939 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1268 939 Gene3D Phosphorylase Kinase; domain 1 740 844 - -
Cone15ag1268 939 Gene3D Transferase(Phosphotransferase) domain 1 845 937 - -
Cone15ag1268 939 SUPERFAMILY RNI-like 85 406 - -
Cone15ag1268 939 Pfam Leucine Rich Repeat 612 631 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 153 175 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 130 151 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 584 606 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 370 392 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 490 512 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 515 534 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 466 488 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Leucine Rich Repeat 419 440 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Pfam Protein kinase domain 774 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1268 939 SMART serkin_6 771 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1268 939 SUPERFAMILY Protein kinase-like (PK-like) 762 922 IPR011009 -
Cone15ag1268 939 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 389 917 IPR052592 -
Cone15ag1268 939 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524(InterPro)
Cone15ag1268 939 FunFam Predicted protein 195 291 - -
Cone15ag1268 939 FunFam Putative LRR receptor-like serine/threonine-protein kinase 612 697 - -
Cone15ag1268 939 SMART LRR_typ_2 558 582 IPR003591 -
Cone15ag1268 939 SMART LRR_typ_2 296 320 IPR003591 -
Cone15ag1268 939 SMART LRR_typ_2 606 630 IPR003591 -
Cone15ag1268 939 SMART LRR_typ_2 175 199 IPR003591 -
Cone15ag1268 939 SMART LRR_typ_2 631 654 IPR003591 -
Cone15ag1268 939 SMART LRR_typ_2 344 368 IPR003591 -
Cone15ag1268 939 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515(InterPro)
Cone15ag1268 939 Gene3D Ribonuclease Inhibitor 38 191 IPR032675 -
Cone15ag1268 939 FunFam Leucine-rich receptor-like protein kinase family protein 37 194 - -
Cone15ag1268 939 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 844 - -
Cone15ag1268 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1268 939 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1268 Cone-Chr15:9990878 Cone16ag0085 Cone-Chr16:455027 2.39E-68 dispersed
Cone14ag1244 Cone-Chr14:10050867 Cone15ag1268 Cone-Chr15:9990878 1.94E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82181 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1268 - - - 0.0