Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1278 ATGAGTAAAAAAGACAATCAAAGCCCGAAAGCTGAGGTGGGAGAGGTAGACACCAGAGCTCCATTCCAGTCAGTTAAAGATGCGGTGTCTCTCTTTGGAGAAGTTGCCTTCTCAGGTGGCAAGCGCGTGATAAAGAAGGCTAAACCTCATTCTGCCAAGGGAGTGTTTGCTAAAGAGACGAAACTCCTTGTGGCTCAGAAGGATGTGAGCAAGCTAAAAGAGCAGCTACAGAATGCTGAATATACCAAAACTGAAGCACTAAGTGAGTTAGAAAAGGCTAAAATAACGGTTGAGGATCTGACCCTTAAGTTGAAATCTCTGATTGAATCCAAAGAATCTTCAATTAAGGTCAAAGAAGGTTTGGAAAATGAAGGAAAGCAGCTTGAGGAAGCAAATGGATTCAGACCTGCGAGAAGTGATGATACTTCAAAACAAGAGTTGGAAACTGCAAGAGAACAATATATCGTAGTGATTAATGAACTGGATGCTACTAAGCAAGAACTGAGAAAAATGCGTGAAGATTATGATTCGTCCTTGAAAGAGAAAGTTGTTTCCTTGAAACAAAAGACAGAAGCTGGGGATGCCATTACAGCACAGAAGGAGAGAGCCAATGAGCTCCTTGAGGAAATTTCAGCTGCTCAGAAATCAATTGAGCAGCTGAAGAGCGCATCAGTGCAATCCCAGAAAGATCAAGAAGATGTATTTGTTGAAAAGACTGGGCAGAAACTTTCATATAAAGCTGCCCTTGAAGAGTCAGAAAGGAAATTGCTCACCTTGAAGAAAGATTTTGATCCGGAACTACCCCGAAATCTTGAATTGGTATTATCTCAAACAATGAATGAAATTGGGTCAATACAGAAGCAAATGGAAAGTATGAAGACTTTGGATTTAGCTGTGGTGAAGAATGTTACTACAAAGCTGGATGATGCTAAAGAATCTCTACATAAAGTAGTAGAAGAGGAAAACACTCTTTGTAGCTTGGTTGAAACTCTGAAGTTGGAGCTAGAGAATGTAAAGAAACAGCACTCCGAACTCAAGCAGAAGGAAGCAGAAACAGAATCTGTTGCTACAAATTTGCATGTTATGCTTTGTAAGAGTAAGTCTGAGCTTGAAGCATTTGTTGGAGAAGAATCTAAGGCTAGAAGTACTTGTGAGGAAATGATCTCAACCCTTACTCAGATATCATCAGAGACCGAAAAGGCAAGACGAGAAGCTGAAGAGATGAAAGCTAAAGCAGAAGAATTAAAGAAAGAAGCTCAAGAAACCAAAATTGCTTTGGAAGAGGCTGAGAAGAAACTTATAGTCGCTGAAAAAGAAGCAGAAGAAGCAAAAGCAGGAGAAACAAATGCTCTTGATCAGATCAAGGACTTGTCAGAGAGAACCAGTGCTGCCCGAGCATCAACTTCAGAAAGTGGGGCCAAGATCACAATCTCGAAAGAAGAGTTTGAGTCGTTGAGTCGGAAAGTGGAGGAGTCTGAAATGTTAGCTGAAATGAAAGTAGCTGCTGCTTTAGCTCAAGCTGAGGCTGTGAGGGCTAGTGAAAATGAGGCTCGTAAGAGATTGGAATTAGTCCGGAAGGAAATTGAGGATATGAAGGGTGAAATGGAGGTGGCTTTGAAGAAGGCAGAGATGGATGAAGCTGCCAAAAGGGTGGTGGAGGGAGAGCTGAGGAAATGGAGAGAAAGAGAGCAGAAGAAGGCGGCAGAAGTTGCTTCTAGGATATTGGCCGAGACTGAGAATGTCCCGTCTCTTCCGGAATCTTCTGCACAACAACAGTATAGCTTTCATGAGAAGCAGAAGAACTCTCCGGTTAGAGTTATCGAGGTACGGAAATTGGAGAAGGAGAAAAGTACTTCTAAGAAGGTTGTTTTACCAGGAATTGGTGGTATAGCATCTTTTATTAGGAGAAAGAACCAAGTTTGA 1923 41.76 MSKKDNQSPKAEVGEVDTRAPFQSVKDAVSLFGEVAFSGGKRVIKKAKPHSAKGVFAKETKLLVAQKDVSKLKEQLQNAEYTKTEALSELEKAKITVEDLTLKLKSLIESKESSIKVKEGLENEGKQLEEANGFRPARSDDTSKQELETAREQYIVVINELDATKQELRKMREDYDSSLKEKVVSLKQKTEAGDAITAQKERANELLEEISAAQKSIEQLKSASVQSQKDQEDVFVEKTGQKLSYKAALEESERKLLTLKKDFDPELPRNLELVLSQTMNEIGSIQKQMESMKTLDLAVVKNVTTKLDDAKESLHKVVEEENTLCSLVETLKLELENVKKQHSELKQKEAETESVATNLHVMLCKSKSELEAFVGEESKARSTCEEMISTLTQISSETEKARREAEEMKAKAEELKKEAQETKIALEEAEKKLIVAEKEAEEAKAGETNALDQIKDLSERTSAARASTSESGAKITISKEEFESLSRKVEESEMLAEMKVAAALAQAEAVRASENEARKRLELVRKEIEDMKGEMEVALKKAEMDEAAKRVVEGELRKWREREQKKAAEVASRILAETENVPSLPESSAQQQYSFHEKQKNSPVRVIEVRKLEKEKSTSKKVVLPGIGGIASFIRRKNQV 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10040779 10043882 - Conep15aG0130700.1 Cone15ag1278 454406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1278 640 MobiDBLite consensus disorder prediction 581 599 - -
Cone15ag1278 640 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 14 598 - GO:0005829(PANTHER)|GO:0009903(PANTHER)|GO:0009904(PANTHER)
Cone15ag1278 640 Coils Coil 300 320 - -
Cone15ag1278 640 Coils Coil 328 355 - -
Cone15ag1278 640 Coils Coil 242 262 - -
Cone15ag1278 640 Coils Coil 514 545 - -
Cone15ag1278 640 Coils Coil 196 223 - -
Cone15ag1278 640 Coils Coil 147 181 - -
Cone15ag1278 640 MobiDBLite consensus disorder prediction 126 145 - -
Cone15ag1278 640 Pfam Weak chloroplast movement under blue light 15 565 IPR008545 -
Cone15ag1278 640 MobiDBLite consensus disorder prediction 580 601 - -
Cone15ag1278 640 Coils Coil 391 446 - -
Cone15ag1278 640 Coils Coil 62 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1278 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0944 Cone-Chr14:7633233 Cone15ag1278 Cone-Chr15:10040779 1.07E-104 dispersed
Cone14ag1256 Cone-Chr14:10101199 Cone15ag1278 Cone-Chr15:10040779 3.75E-50 dispersed
Cone15ag0937 Cone-Chr15:7424748 Cone15ag1278 Cone-Chr15:10040779 2.59E-90 dispersed
Cone15ag1278 Cone-Chr15:10040779 Cone1ag0065 Cone-Chr1:328956 2.60E-64 dispersed
Cone15ag1278 Cone-Chr15:10040779 Cone15ag1279 Cone-Chr15:10044862 3.40E-185 tandem
Cone14ag1255 Cone-Chr14:10099753 Cone15ag1278 Cone-Chr15:10040779 6.50E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41