Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1280 ATGGCCTCAAAATCTGGTACCAAAGCTTCTGAAGAAGCCCAAAAGAAAGTGATTAGTAATCAAAAAGCCGAACAAAATCCCCCCTTGCAAATCACTAAGACGAGCAAAGCTGAGCCAGTTATCCCAACAAAAGAACCTGAAAGAGCACAAGAAGTTTTATCAAAGGAGGAGGTTTCTATTGAAAATTCAAAGAAGAAAGAAGAGTCCTCTAATTCCTTAGCTGACAAGTTGGAAGCAAATTGTTCCCTGGCTGATCCAAAACAAGAGCAAAAGAAAGCCTCATCTAAGGTAGGGTCCTGTAAAACCCACAGTGACCGACCGGAATTTATGGATAGTGGGAAAAGTAGTATGTGTAGAGGTAGTACAAGTAGTGATATGAGCGATGAGAGTTCATGTAGTAGTTTAAGCAGCTCTGCTAATAAACCCCACAAAGCAAACGATGTAAGATGGGAAGCGATCCGAGCAGTCCGTTTGAAAGATGGCGCTTTGGGTGTGAGCCATTTTAGGCTCTTGAAGAAGCTTGGAAGTGGAGATATAGGATGTGTTTATCTCTCTGAATTGAGAGGGACAAAGTGTTGTTTTGCTATGAAGGTTATGGATAAGGCATCTTTAGTGAGCCGTAAGAAGCTTCTTAGAGCTCAAACCGAAAGAGAGATTCTTCAATCGCTCGACCATCCTTTTTTGCCGACTCTTTATACTCATTTTGAGACAGATAAGTTCTCTTGTTTGGTTATGGAGTTTTGCCCTGGAGGTGATTTGCACACTCTTCGGCAGAGGCAGCCTGGAAAGTATTTTTCTGAACAAGCAGTCAAATTCTATGTGGCAGAAATTCTCCTTGCTCTAGAATATCTCCATATGCTTGGAATTGTTTACCGTGATCTCAAACCGGAAAACGTCCTTGTTAGAGAAGACGGTCATATAATGCTTTCCGACTTTGACCTTTCCCTCCGTTGTGTTTCTAGCCCGACCCTAGTCAAGTTCTCCATCCCAGATTCTGATGCTCTCCGGAGAAACCCGGTCTATTGCATCCAACCAGCTTGCATCGGACCCTCTTGTATCCAACCATCGTGTGTCATGCCCACCACTTGCTTTTCACCCCGCCTCCTCTTCTCAAAATCGAAGAAAGAAAGAAAACCCAAAAACGAAATGGGAAATCAGGTGAGCCCACTCCCCGAGCTCGTTGCGGAGCCCACTAATGCCCGGTCCATGTCATTTGTTGGGACCCACGAGTATTTAGCCCCCGAGATTATCAAAGGTGAAGGCCATGGAAGTGCTGTTGATTGGTGGACTTTCGGGATTTTTCTTTATGAGCTTTTGTTCGGGAAGACTCCATTTAAAGGGTCCGGAAATTGTCAAACTTTGTTTAATGTAGTGGGCCAGCCTCTACGGTTTCCGGAATCTCCAATGGTTAGTTTTTCAGCCCGGGATTTGATTAGAGGCTTGCTTGTTAAAGAGCCTCATAATCGGTTGGCTTACGAGCGTGGCGCGACAGAGATTAAACAGCATCCGTTTTTCGAAGGCGTGAATTGGGCCTTGATCCGTTGTGCTAGCCCGCCTGAGATTCCGAGGCCTGTTGTCGAGACTCCGAGAATTCTGGGACCCACTTCTACTACAGCAGGTGATAAAGCGACTGCTGTTTCTGATGAAAGCAATTATTTGGAATTCGACTTCTAA 1674 44.86 MASKSGTKASEEAQKKVISNQKAEQNPPLQITKTSKAEPVIPTKEPERAQEVLSKEEVSIENSKKKEESSNSLADKLEANCSLADPKQEQKKASSKVGSCKTHSDRPEFMDSGKSSMCRGSTSSDMSDESSCSSLSSSANKPHKANDVRWEAIRAVRLKDGALGVSHFRLLKKLGSGDIGCVYLSELRGTKCCFAMKVMDKASLVSRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFSEQAVKFYVAEILLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCVSSPTLVKFSIPDSDALRRNPVYCIQPACIGPSCIQPSCVMPTTCFSPRLLFSKSKKERKPKNEMGNQVSPLPELVAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNCQTLFNVVGQPLRFPESPMVSFSARDLIRGLLVKEPHNRLAYERGATEIKQHPFFEGVNWALIRCASPPEIPRPVVETPRILGPTSTTAGDKATAVSDESNYLEFDF 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10048589 10052167 - Conep15aG0130900.1 Cone15ag1280 454408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1280 557 SMART serkin_6 168 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1280 557 Coils Coil 60 80 - -
Cone15ag1280 557 Gene3D Transferase(Phosphotransferase) domain 1 399 522 - -
Cone15ag1280 557 CDD STKc_phototropin_like 166 524 - -
Cone15ag1280 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 289 301 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone15ag1280 557 FunFam Serine/threonine-protein kinase D6PK-like 166 251 - -
Cone15ag1280 557 MobiDBLite consensus disorder prediction 19 37 - -
Cone15ag1280 557 MobiDBLite consensus disorder prediction 115 143 - -
Cone15ag1280 557 PANTHER FLIPPASE KINASE 1-RELATED 44 526 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone15ag1280 557 MobiDBLite consensus disorder prediction 89 112 - -
Cone15ag1280 557 Gene3D Transferase(Phosphotransferase) domain 1 252 321 - -
Cone15ag1280 557 FunFam serine/threonine-protein kinase D6PK-like 400 523 - -
Cone15ag1280 557 Pfam Protein kinase domain 169 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1280 557 Pfam Protein kinase domain 402 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone15ag1280 557 MobiDBLite consensus disorder prediction 1 143 - -
Cone15ag1280 557 Gene3D Phosphorylase Kinase; domain 1 166 251 - -
Cone15ag1280 557 FunFam serine/threonine-protein kinase D6PK-like 252 319 - -
Cone15ag1280 557 SUPERFAMILY Protein kinase-like (PK-like) 145 533 IPR011009 -
Cone15ag1280 557 MobiDBLite consensus disorder prediction 40 73 - -
Cone15ag1280 557 ProSiteProfiles Protein kinase domain profile. 168 505 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1280 Cone-Chr15:10048589 Cone5ag1793 Cone-Chr5:12725115 3.64E-249 dispersed
Cone12ag1291 Cone-Chr12:9841439 Cone15ag1280 Cone-Chr15:10048589 1.04E-08 wgd
Cone14ag1258 Cone-Chr14:10108389 Cone15ag1280 Cone-Chr15:10048589 0 wgd
Cone15ag1280 Cone-Chr15:10048589 Cone8ag1349 Cone-Chr8:10827919 5.93E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82183 PF01554 MatE 1.20E-19 CL0222 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1280 K08286 - vvi:100258297 810.446