Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1285 ATGAAGATCACAGTCATGACCGCCGACGAACAGATCCTAACACTAGACGTCGATCCTCATGAATCTGTTGAGAACCTGAAAGCTCTTCTCGAGGTGGAGACACAAGTGCCGCTTCAACAGCAGCAACTGCTATACAATGGGAAGGAGATTAGGAATTCTGAGAAATTGAGTGCGTTGGGTGTCAAAGATGAAGATTTGATTATGATGGTTTCCAGTGGTGCATCAAGTGCTACCACCAATAATTTAGGCTTAAACCCTGATGGATCTGCTGTGAACCCTGGAGCTCTCCAGCAGCAACTTAGAAATGATGCTAACACAATGGCACAACTGTTTCAGACAGATCCTGAATTAGCACAAGCTATTGTTGGAGATGATCTGAACAAACTGCAAGCTGTTTTGCGAGATCGTCAACGGCATAGATCTGAATTACGCCGTCAACAAGATGAGGAGCTTGCACTGCTTTATGCAGATCCCTTTGATGTGGAAGCTCAGAAGAAGATTGAAGCTGCTATTCGTCAGAAAGGAATCGATGAAAATTGGGCTGCTGCCCTTGAGCACAATCCGGAAGGTTTTGCTAGGGTGGTCATGTTGTATGTTGACATGGAGGTGAATGGCGTTCCTTTGAAGGCATTTGTTGATAGTGGTGCTCAGTCGACAATTATATCAAAAAGTTGTGCTGAGAAATGTGGATTGTTGAGGCTGTTAGATCAACGTTATAAGGGCATTGCTCATGGTGTTGGTCAATCAGAAATATTAGGTCGGATACATGTCGCTCCAATAAAGATAGGGAACATATTTTACCCTTGCTCATTTATGGTGCTAGATGCTCCAAATATGGAGTTCCTCTTTGGCCTGGATATGCTTCGGAAGCACCAGTGCATAATAGATTTGAAGGAGAATGTTTTGAGAGTTGGTGGAGGAGAGGTTGCTGTACCATTTTTGCAAGAAAAAGACCTCCCATCTCATTATCTAGATGAAGAAAGGTTCTCCAAGCAAGCATCCAGTTCTGGAGCTCCAGCGACGTCAGGAGATAAAAGTAATAGTGCACCAATACTCTCAGGCCAAACTCCAGCAAGTTCTAGTGGTGGAACATCTCAGGGACCTGAATTTGAGACAAAAGTTGCCAAGCTTGTGGAGCTGGGATTTGGAAGAGATGCAGTCATACAAGCACTCAAGTTGTTTGATGGCAATGAAGAGCAGGCAGCTGGGTTTCTTTTTGGCTGA 1224 44.28 MKITVMTADEQILTLDVDPHESVENLKALLEVETQVPLQQQQLLYNGKEIRNSEKLSALGVKDEDLIMMVSSGASSATTNNLGLNPDGSAVNPGALQQQLRNDANTMAQLFQTDPELAQAIVGDDLNKLQAVLRDRQRHRSELRRQQDEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEGFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAEKCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFMVLDAPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVAVPFLQEKDLPSHYLDEERFSKQASSSGAPATSGDKSNSAPILSGQTPASSSGGTSQGPEFETKVAKLVELGFGRDAVIQALKLFDGNEEQAAGFLFG 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10071865 10076273 - Conep15aG0131400.1 Cone15ag1285 454413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1285 407 SMART uba_6 370 407 IPR015940 -
Cone15ag1285 407 SUPERFAMILY Acid proteases 182 297 IPR021109 -
Cone15ag1285 407 CDD UBA_scDdi1_like 371 406 - -
Cone15ag1285 407 Pfam UBA/TS-N domain 371 403 IPR015940 -
Cone15ag1285 407 FunFam DNA damage inducible 1 homolog 2 174 321 - -
Cone15ag1285 407 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Cone15ag1285 407 Pfam Aspartyl protease 174 296 IPR019103 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone15ag1285 407 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Cone15ag1285 407 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515(InterPro)
Cone15ag1285 407 CDD RP_DDI 181 304 IPR019103 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone15ag1285 407 MobiDBLite consensus disorder prediction 330 368 - -
Cone15ag1285 407 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cone15ag1285 407 Gene3D Acid Proteases 175 321 IPR021109 -
Cone15ag1285 407 Coils Coil 126 149 - -
Cone15ag1285 407 SUPERFAMILY UBA-like 352 407 IPR009060 GO:0005515(InterPro)
Cone15ag1285 407 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 368 407 IPR015940 -
Cone15ag1285 407 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 405 - -
Cone15ag1285 407 Gene3D - 1 83 - -
Cone15ag1285 407 Gene3D - 334 407 - -
Cone15ag1285 407 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1285 K11885 - - cit:102607231 680.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1263 Cone-Chr14:10128841 Cone15ag1285 Cone-Chr15:10071865 3.34E-206 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g751 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1285 . Csa07g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01025 Cme01g01107
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005655 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 1 38