Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1286 ATGGCGAGCTCGGATGTGGTTCAGCGTGCCAAGTACAAGGTCTCAATCAAGGATCCTGGAAATCCAGGTGTTTTGAAAATGAATCATAACAAACTTACATTCACACCCAATGATCCCACATCATCTACAAAGCTCGATGTGAGTTTCTGTTCTATTAAAGCATTCAAAAACACCAAGGAGGGATCAAATAAACCGCCATGGTTGAATCTTTCTAACGACCAGGGTGGGAGTTACATTTTTGAGTTTAACAAGTTTCCAGATCTTCATGTTTGCCGGGAATTTGTGGGTGATGTTTTATCAAAGATAGGAAAGAATGCAAAACCTGCTCCGGAGAAGCCTGTTACTACTTTGCCAGTAGCAGAACAAGTTGAACAACTTGGTAAGGAAGAGCTAGAGCTCCGGATGAAGCTTCTGCAAGAGGATAGCGAATTGCAAAAGCTTCATATGAAGTTTGTTATTGGTGGTATCTTGACTGAATATGAGTTTTGGGCAACAAGGAAGAAGTTGCTGGGTAAGGACAAATCCAAAAAGTCAAAACAGCAGGTTGGCTTCAAGAGTTCGATGATTTTGGATACCAAACCCATTTCTGATGGCCGGACAAACAAGGTTACGTTCAACTTGACGCCAGAGATCATATATCAGATTTTCGCTCTCAAACCTTCCGTGCAACGGGACTTCCTGAAGTATGTTCCTAGTAAGATGACCGAGAAGGACTTCTGGTCAAAATATTTTAGAGCTGAATATCTTCACAGTACAAGAAATTCTATAGCCGCTGCTGCAGAGGCTGCCGAAGATGAGGAACTCGCTCTTTTTCTAAAGGAAGATGAAATATTAGCCAATGAATCTCGGCGGAAGATCCAAAGAGTTGATCCCACTTTAGACATGGCAGCTGACCAAGGGGATGATTATACTCATCTCCCAGATCATGGGATCTTACGTGATGGCAGCAAGGATGTACAAGATTCACAAAACAACCAATACAGGAGAACTTTGTCGCAAGACCTTAATCGACAGGGTGCTGTTGTTCTTGAAGGAAGAACCATAGATGCAGACTTGGATGATCCAATGATTGTGGCAGAGAAACTTGTGAGGTCAAGAAAGGAGGGAAAGGAAAAGCAGGAGTGGATTGATCGGGTTTCCCAGATGACTGAAATTGAGGACCTTCTATCATCTGATTACCATGGTTTTGCACATCTTTGCATCAAGGACCCTCGAGACTACTTTGATTCCCAGCAAGCTAATGCAATAAAAATGTTGGATGACACACGGGCTGGAATGGAACAGATTAGATGCAGTCTGAGCAGTAGTGTAGCATATGGCTCTCTTAGGGAGTCCATATCTGATATCAAAACAACAGGATTGCCTGATCCCATAATAGGACCTCAATTGGCTTTTATGGTTCTTAATGGATTGAACCACAATATCTCCTCTTCCAAGTATCAGCATGGGAATAATCCGCAGGAGAGTCTGCTGGAAAGGTTGCCTAACACCACAAAAGAAGAACTTCTTCATCACTGGATGTCAACTCAAGAATTATTGAAGCACTTCTGGTCTTCTTATCCAATTACTACAACACATCTTTCTAACAAGGTAAGCAAACTGAAGGATGCCATGTCACAGATTTATAGACAACTAGAGGACATCAAGAAATCCGTGCAGTCAGATTTACGTCACGAGGTTTCTCTCTTGGTGCGACCAATGCATCAGGCTCTAGATGCCGCTTTTCAGCATCATGACACAGAATTGCTAAGGAGATCATCATTGTCGTTGTCGTCAGAAAGGGGTGGAGAGAGATATAAAAGTAATGGATATAATCGAGTGTGA 1824 42.43 MASSDVVQRAKYKVSIKDPGNPGVLKMNHNKLTFTPNDPTSSTKLDVSFCSIKAFKNTKEGSNKPPWLNLSNDQGGSYIFEFNKFPDLHVCREFVGDVLSKIGKNAKPAPEKPVTTLPVAEQVEQLGKEELELRMKLLQEDSELQKLHMKFVIGGILTEYEFWATRKKLLGKDKSKKSKQQVGFKSSMILDTKPISDGRTNKVTFNLTPEIIYQIFALKPSVQRDFLKYVPSKMTEKDFWSKYFRAEYLHSTRNSIAAAAEAAEDEELALFLKEDEILANESRRKIQRVDPTLDMAADQGDDYTHLPDHGILRDGSKDVQDSQNNQYRRTLSQDLNRQGAVVLEGRTIDADLDDPMIVAEKLVRSRKEGKEKQEWIDRVSQMTEIEDLLSSDYHGFAHLCIKDPRDYFDSQQANAIKMLDDTRAGMEQIRCSLSSSVAYGSLRESISDIKTTGLPDPIIGPQLAFMVLNGLNHNISSSKYQHGNNPQESLLERLPNTTKEELLHHWMSTQELLKHFWSSYPITTTHLSNKVSKLKDAMSQIYRQLEDIKKSVQSDLRHEVSLLVRPMHQALDAAFQHHDTELLRRSSLSLSSERGGERYKSNGYNRV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10076416 10081288 + Conep15aG0131500.1 Cone15ag1286 454414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1286 607 ProSiteProfiles BSD domain profile. 128 174 IPR005607 -
Cone15ag1286 607 SUPERFAMILY PH domain-like 8 105 - -
Cone15ag1286 607 SUPERFAMILY BSD domain-like 199 250 IPR035925 -
Cone15ag1286 607 MobiDBLite consensus disorder prediction 586 607 - -
Cone15ag1286 607 Gene3D - 128 167 - -
Cone15ag1286 607 ProSiteProfiles BSD domain profile. 199 251 IPR005607 -
Cone15ag1286 607 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 1 585 IPR027079 GO:0000439(PANTHER)|GO:0000439(InterPro)|GO:0005675(PANTHER)|GO:0006281(PANTHER)|GO:0006289(InterPro)|GO:0006351(InterPro)|GO:0006360(PANTHER)|GO:0006366(PANTHER)|GO:0070816(PANTHER)
Cone15ag1286 607 SMART wurzfinal6 199 251 IPR005607 -
Cone15ag1286 607 SMART wurzfinal6 122 174 IPR005607 -
Cone15ag1286 607 Pfam BSD domain 201 254 IPR005607 -
Cone15ag1286 607 SUPERFAMILY BSD domain-like 124 170 IPR035925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1286 K03141 - - csv:101203811 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1264 Cone-Chr14:10133231 Cone15ag1286 Cone-Chr15:10076416 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1286 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003179 1 12 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 0 1 1 0 1 1 2 1 1 2 1 1 41