Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1288 ATGGCGTCTCCTGGAAATCCAAACCAGAATCAGCAGCAACCACCATTCGATATGCAGAAATTCTTTAAACCCTTAAATTCAATCCCCGCTCCTTCTCCCTCTATACCTACATCCTCCTCCTCCTCCTCACAAAACCCTCCTCCTCTTCCCAGTTCCCCTTTCCCACCGCCTTCTGCCTCTTTCCCCCCTCCCTCCGGCCCTTTCTCCTACCCTCTCCAGAACGCACCCTATCACCATCAGTACCATCCCCAACTCGCCCCTTCCTATTCCCAAGACCAGTTCTCTAACTTGCACCATCAGCGCTCTCTTTCTTATCCTACGCCCCCGCTTCAACCTTCTCCTTCTCCTCCTCCACATAACATCCCTGTCCCTCAAAATAATTTAGGTCAGAATTCCGGAGCTCGAATCATGGCCATGATTAAAGCCCCTGGTTCCAATCTTGAACCGCCCCAGCTTCAAGGTCCATCTACTACTCCGTTGGGTTCCATTTCCCCTCATTCTTCCGGAGTCCCAGAATTTTCGGCCCCGCCCAATAATGTCCCTGGCATGTCGAACATACCGATTCTCCATCCTGGATTAACATCTTCGGGCCCTATTAGAATGCCAAGTAGTAAGCTTCCAAAAGGGCGGCATTTGATCGGAGATTATGTGACCTATGATGTCGATGTTAGGCTGCAAGGAGAGGTCCAACCTCAGCTTGAAGTTACTCCCATAACCAAGTATGGGTCCGATCCTCAGCTCGTGTTGGGCCGTCAAATTGCTGTGAACAAGACTTATATATGTTATGGCTTGAAGCAGGGGAATATTCGCGTCCTCAATATCAACACTGCTTTGAGATCTCTGTTTCGAGGCCACGAAAAGAGAGTAACAGACATGGCTTTCTTTGCAGAGGATGTTCACCTTTTGGCAAGTGTTGACATAGGCGGACGGGTTTATGTGTGGAAAATCTCTGAAGGTCCGGATGAAGAAACTAAGCCACAAATTACTGGAAAGGTTGTTATTGCCCTTCATATAGAAGGAGAGGGTGAAGTTGTGCATCCCCGTGTTTGTTGGCATTGTCACAAACAGGAAGTTTTGGTAGTCGGGTATGGCAAGTCTGTTTTAAGAATCGATACAACTAAAGTTGGAAAGGGTGAAATCTTCTCTGCAGAAGCTTCCCTTAAGTTTTCCCTTGACAAGCTGATTGATGGGGTCCAGCTTGTTGGCAGACATGATGGAGAAGTGACAGAGCTGTCAATGTGTCAGTGGATGACTTCCCGTCTAGTTTCTGCTTCTATGGACGGAACGATAAAGATATGGGAGGATCGCAAGGCAGCACCACTTGCAGTATTTAGACCACATGAAGGCCAACCTGTAAATGCAGCTACTTTCTTGTCTGCTCCGCATCGACCAGATCACATTATACTTATCACAGCGGGACCGCTAAATCGAGAGGTGAAAATATGGGCCTCTGCAAGTGAGGAAGGCTGGCTACTTCCTAGTGATGCAGAATCATGGAAATGCACCCAGACATTGGAGTTGAAGAGTTCATCTGAAAATCAAGTGGATGTGGCATTTTTCAATCAAGTTGTGGCATTGTCTCAAGCAGGCCTTCTTCTACTTGCCAATGCTAAGAAGAATGCCATTTACGCGGTTCACTTAGATTACAATCAAAACCCAACTACAACTCGCATGGATTACATTGCAGAGTTTACTGTCACTATGCCAATTTTGAGCTTCACTGGGACAAGTGAGATAATAGATCGCAACACGCATATTGTTCAAGTTTATTGTGTCCAGACACAAGCCATTCAGCAATATGCTTTGGACTTATCCCAGTGCTTGCCACCGCCCCTGCAGAATGCAGGATTAGATAAGGCAGATTCCAGTAATGTTTCACAGGATTTAACTAATGCTGAAGGACTTTCTACACCGGTTTCATCTGGAAGTAGACCTACTGAGACGCTCTTATCTGGTTCTACACCCAAAGCAGCTGTCGTAAATGGAACTGAGAGTGCAACTGCTGAAAGATATCCTGTAAGGTCAGGTTCTCTTGAGGCAACTTCTGAATCTAAGCCCATTTCACTTGCACAAGCAACTAGCAATGCAGATATTAGTTTTGCTGCATCACCTCCTCTTCCTTTGAGTCCGAGGGTGTCTAGAAATCTGTCCGGCTTTAAAAGTCCGACGAGCTATGAGCCTGTTTCCCCATTCAAAGACCATGGTGGGGACCAGCGTGTGAATGACTTTACAGTTGATAGACAAATGGATCATGTTCATGCAAATTTGTCTGATGTGCCTTCTCTAGATGATGATTCAAGAAATAATGAAGAAAAACTTTCTCGAGAAGATCTATCCAGTGCCCTTAACTCACCTATCATGTTTAAACACCCAACTCATTTAATTACTCCATCTGAGATACTAATGGCCGTGTCTTCATCTGACACCACGGGAGTCGTTGAAGGAAAGAGTGAGGGAGACGCAAATATTCAGGATGTGGTTGTCAATGATGATGTAGGCATTACAGAATTGGAGGTCAAAGTAGTGGGTGAAATGAGATCATTTCCTCAGAACAATGAATATGGTTCAAGGGGTGAACCTCGAAACATTACTGAAAATAAGGAAAAACTTTTTTGCTCCCAAGCCTCAGACCTTGGGATCGAAGTGGCCCGAGAATGCTCTGCAATATCATCTGAAACTTATATTCTAGAGGATGCTAGACAGGTTGACGGTGATAATGTGGACATGCAACCATCTCAAATTGGTGAAGAAGATCAAACCCCCACAAAGGATGTGCCTGAAAAGGCCTCTGAGTCATCTACATCTACAACAGTTCCACAAATGCCAATTTCAAGTTCAAAAGGGAAGAAGCAAAAGGGGAAAAACTCACAACCATTCGATATGTCTTCCTCAACTCCTAGTGCTTTCAATTCTACAGATTTTAATGAACCCGGTGGGAGTTCGAATCTTTCCTCTGCAGAAGGTTCTATTCCCCATTTTCTGGCCATGCAGGATATGTTGAATCAGCTAATGACTGCACAAAAAGAAATGCAAAAGCAGATACAGATGCTGGTTACAGTTCCAGTAAACAAAGAAGGCAAAAGACTGGAGGTAGCTCTTGGGCGGAGCATGGAGAAGGCTGTCAAGGCAAACAGTGATGCTTTGTGGGCTCGTTTTCAGGAGGAAAATGCAAAAAACGAGAAGGCTTCGCGAGATAGTATGCAAAAGATGACTACTATGATGAATAACTTCATGAATAAGGATTTGCCCACCTTGTTAGAGAAGACAGTGAAAAAGGAAATGGCTGCTGTTGGTCCAGCTCTTGTCCGCACCATCACTCCCGCTATTGAGAAAACAATCGCTTCAACTATTGTTGATTCTTTCCAGAGAGGAGTGGGTGATAAGGCAGTGAATCAACTTGAAAAATCCATCAATTCAAAACTCGAAGCCACTGTTGCGAGACAAATCCAAGCACAATTTCAAACTTCTGGAAGACAAGCCCTTCAGGATGCACTAAAATCTAGCTTGGAAGCTTCACTAATTCCTGCTTTTGAAATGTCATGCAAAGCAATGTTTGAGCAAGTGGATTCCACATTTCAGAAAGGAATGATTGAGCATACTGCAGCAGCTCAGCAGCACTTTGAGTCCGCTCATTCTCCTTTGGCACTTGCTCTAAGGGATGCAATTAATTCAGCATCTACAATGGTTCAATCGATGGGTGGAGAACTGGCTGAAGGACAAAGAAAGCTGATAGCTCTTGCAACTGCGAGCTCAAATGCCAGTTCCATGAACCCCTTGGTTACCCAACTCAGCAACGGACCCCTTGCTGGTCTTCATGAGAAGATCGAGGTATCAGTGGACCCAACAAAAGAATTGTCAAGGCTGGTATCTGAACGCAAGTACGAAGAAGCATTCACTACAGCCTTACAGAGGAGCGATGTGTCCATTGTTTCTTGGTTATGTAGTCAGGTTGATCTTCGATATATTCTGACTTTGGTTCCTCTGCCATTGAGTCAAGGAGTACTTCTCTCTCTTCTGCAACAATTGGCCTGTGATGTGAACAAGGATAAAGCCCAGAAACTGTCTTGGTTGACTGATGTGGCTGCTGCCATAAATCCTACAGACCTAATGATTTCAATGCACGTTCGGCCCATTTTCGAGCAAGTCTATCAGATAATGAACCATCAGCGGAGCTTGCCCAGCACCACTGCCTCCGAGCTCTCCTGCATTAGAGTTCTGATGCATGTGGTCAACTCTGTGCTGGTGACTTGTAAATGA 4257 45.13 MASPGNPNQNQQQPPFDMQKFFKPLNSIPAPSPSIPTSSSSSSQNPPPLPSSPFPPPSASFPPPSGPFSYPLQNAPYHHQYHPQLAPSYSQDQFSNLHHQRSLSYPTPPLQPSPSPPPHNIPVPQNNLGQNSGARIMAMIKAPGSNLEPPQLQGPSTTPLGSISPHSSGVPEFSAPPNNVPGMSNIPILHPGLTSSGPIRMPSSKLPKGRHLIGDYVTYDVDVRLQGEVQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDIGGRVYVWKISEGPDEETKPQITGKVVIALHIEGEGEVVHPRVCWHCHKQEVLVVGYGKSVLRIDTTKVGKGEIFSAEASLKFSLDKLIDGVQLVGRHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKAAPLAVFRPHEGQPVNAATFLSAPHRPDHIILITAGPLNREVKIWASASEEGWLLPSDAESWKCTQTLELKSSSENQVDVAFFNQVVALSQAGLLLLANAKKNAIYAVHLDYNQNPTTTRMDYIAEFTVTMPILSFTGTSEIIDRNTHIVQVYCVQTQAIQQYALDLSQCLPPPLQNAGLDKADSSNVSQDLTNAEGLSTPVSSGSRPTETLLSGSTPKAAVVNGTESATAERYPVRSGSLEATSESKPISLAQATSNADISFAASPPLPLSPRVSRNLSGFKSPTSYEPVSPFKDHGGDQRVNDFTVDRQMDHVHANLSDVPSLDDDSRNNEEKLSREDLSSALNSPIMFKHPTHLITPSEILMAVSSSDTTGVVEGKSEGDANIQDVVVNDDVGITELEVKVVGEMRSFPQNNEYGSRGEPRNITENKEKLFCSQASDLGIEVARECSAISSETYILEDARQVDGDNVDMQPSQIGEEDQTPTKDVPEKASESSTSTTVPQMPISSSKGKKQKGKNSQPFDMSSSTPSAFNSTDFNEPGGSSNLSSAEGSIPHFLAMQDMLNQLMTAQKEMQKQIQMLVTVPVNKEGKRLEVALGRSMEKAVKANSDALWARFQEENAKNEKASRDSMQKMTTMMNNFMNKDLPTLLEKTVKKEMAAVGPALVRTITPAIEKTIASTIVDSFQRGVGDKAVNQLEKSINSKLEATVARQIQAQFQTSGRQALQDALKSSLEASLIPAFEMSCKAMFEQVDSTFQKGMIEHTAAAQQHFESAHSPLALALRDAINSASTMVQSMGGELAEGQRKLIALATASSNASSMNPLVTQLSNGPLAGLHEKIEVSVDPTKELSRLVSERKYEEAFTTALQRSDVSIVSWLCSQVDLRYILTLVPLPLSQGVLLSLLQQLACDVNKDKAQKLSWLTDVAAAINPTDLMISMHVRPIFEQVYQIMNHQRSLPSTTASELSCIRVLMHVVNSVLVTCK 1418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10082089 10088753 + Conep15aG0131700.1 Cone15ag1288 454416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 754 777 - -
Cone15ag1288 1418 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 235 551 IPR032401 -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 719 740 - -
Cone15ag1288 1418 SMART WD40_4 275 315 IPR001680 GO:0005515(InterPro)
Cone15ag1288 1418 SMART WD40_4 437 483 IPR001680 GO:0005515(InterPro)
Cone15ag1288 1418 SMART WD40_4 397 434 IPR001680 GO:0005515(InterPro)
Cone15ag1288 1418 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1287 1389 IPR049404 -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 618 661 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 100 130 - -
Cone15ag1288 1418 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 29 1418 IPR045152 GO:0000932(PANTHER)|GO:0031087(PANTHER)|GO:0031087(InterPro)
Cone15ag1288 1418 SUPERFAMILY WD40 repeat-like 256 554 IPR036322 GO:0005515(InterPro)
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 144 179 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 46 70 - -
Cone15ag1288 1418 FunFam Enhancer of mRNA-decapping protein 4 1330 1416 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 1 17 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 618 685 - -
Cone15ag1288 1418 Gene3D - 1330 1417 IPR044938 -
Cone15ag1288 1418 Coils Coil 996 1016 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 926 986 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 1 77 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 900 986 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 149 179 - -
Cone15ag1288 1418 Gene3D - 250 601 IPR015943 GO:0005515(InterPro)
Cone15ag1288 1418 ProSiteProfiles Trp-Asp (WD) repeats profile. 401 434 IPR001680 GO:0005515(InterPro)
Cone15ag1288 1418 FunFam enhancer of mRNA-decapping protein 4 234 548 - -
Cone15ag1288 1418 MobiDBLite consensus disorder prediction 107 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1288 K12616 - - csv:101211283 1962.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1265 Cone-Chr14:10139016 Cone15ag1288 Cone-Chr15:10082089 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43