Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1289 ATGGTACCGCCCCTCTCTCTCTCTCTCTCGATCTCGAACTGTATTCATATTTTATCTCTCTCTTTGTTAAGCCCTCTTTCAATGTTAGGAATCCTAGCCTTCCCCACCGTCAACCCGCTCTTCCAATCGCCGGAGTTCCGTCTATGTCCGACGGAAGCCGGACGCTCCCTCTGCAGAACGCCGCCCCGAAGAAGAAGAATAACCTGTATGGCCTCTGCCCAGGCCTTCGTCGATGCCCATCCAATCACAGATCCCTGTAGAGCCACCACGAGTCTTTACGAGATCCTCCGAGTCAAGCAGAACGCCTCTCCCACGGAAATCAAGACGGCGTATCGGACCTTGGCCAAGGTGTACCACCCCGATTCGCTGCATCAGTCGGAGGCGGACGGTCAGGATTTCATTGAGATCCACAATGCTTACGCCACGCTCTCGGATCCGGTGGCTAGGGCTCTTTACGATCTGTCTCTAGGATCTTGCCGGAGGCGCTCTTCCCTCGGGAATCAAACAGGCTTTTACACGACTCGGAGGTGGGAAACCGATCAGTGCTGGTAG 552 55.07 MVPPLSLSLSISNCIHILSLSLLSPLSMLGILAFPTVNPLFQSPEFRLCPTEAGRSLCRTPPRRRRITCMASAQAFVDAHPITDPCRATTSLYEILRVKQNASPTEIKTAYRTLAKVYHPDSLHQSEADGQDFIEIHNAYATLSDPVARALYDLSLGSCRRRSSLGNQTGFYTTRRWETDQCW 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10089113 10089894 - Conep15aG0131800.1 Cone15ag1289 454417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1289 183 ProSiteProfiles dnaJ domain profile. 91 156 IPR001623 -
Cone15ag1289 183 SMART dnaj_3 90 148 IPR001623 -
Cone15ag1289 183 PRINTS DnaJ domain signature 128 148 IPR001623 -
Cone15ag1289 183 PRINTS DnaJ domain signature 111 126 IPR001623 -
Cone15ag1289 183 PRINTS DnaJ domain signature 93 111 IPR001623 -
Cone15ag1289 183 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Cone15ag1289 183 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 30 183 - -
Cone15ag1289 183 Pfam DnaJ domain 92 153 IPR001623 -
Cone15ag1289 183 SUPERFAMILY Chaperone J-domain 88 156 IPR036869 -
Cone15ag1289 183 Gene3D DnaJ domain 83 171 IPR036869 -
Cone15ag1289 183 CDD DnaJ 93 145 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1289 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1289 Cone-Chr15:10089113 Cone9ag1605 Cone-Chr9:11489957 4.99E-22 dispersed
Cone14ag1266 Cone-Chr14:10145938 Cone15ag1289 Cone-Chr15:10089113 1.31E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g748 . . . Bda09g00449 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1289 . . . . . . . . . . Bma07g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004491 1 1 1 1 0 2 2 2 1 1 2 2 0 1 1 1 2 3 1 2 1 1 2 1 2 1 2 1 1 1 40