Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1295 ATGGCGATGTTACTGAAGAGAGTATGGGAATCGGTGTCGAGCCGTTCTTCAGGTTCGAAATCAGACTTCTCGCCGAGCGATCGTCAGCTCTTCGTGGAATTCTCTTTGGGAGAATTTGATCGGTTACCGTTGGACATACTGATGCAAATCCTGAGGCTGATTGGTCCCAAAGAGGCAGCTAAGATGAGTTTCGTCTGCAAGTCGTGGAAGTCGCTGGTTTCTGATAATCTGCTCTGGATTTTCTTCCTCCACGTTCAGCAGGAGCCTTGGGACTCCATCTTCTTTGCAGAAAGCCACTTGGCCTCGGGCTATCCTCTTCAAACACTGTCATCCAATTTATCTTTCATGCGGATATATGGTCAACGAGCACAGGTGCCTGGCTCTGTTATTATCGATGGTGGTTCTGGTTATTGCAAATTTGGCTGGAGCAAATATGCATGTCCATCTGGACAGTCAGCTACATTTTTGGAATTTGGTAACATTGAATCTCCAATGTACTCTAGACTTCGATATTTTTTCACAACTATTTATAGCAGAATGCGGGTGAAAGCATCATTGCAGCCAGTGGTAGTGTCTCTACCAATCTGTCATTATGATGATACTGAATCAGCCAAAGCATCGAGGCGGCAACTCAAAGAAACCATCTACTCTGTGCTTTTTGACATGAATGTCCCTGCTGTTTGTGCCATTAACCAGGCAACTTTGCCCTTGTATGCAGCAAGAAGAACTTCAGGAATTGTTGTTAACATTGGATTTCAGGTCACCTCTATTGTTCCCATTTTGCATGGTAAGGTAATGCACAAGGTGGGTGTGGAAGTTGTTGGGCTGGGAGCATTAAAACTTACGGGGTACCTTAGGGAGCTGATGCAGCAGAGCAATATTTATTTTGACTCTATGTACACAGTTCGTGTATTGAAAGAGAAATTATGCTACGTTGCTACTGATTATGAAGCTGAGCTATGTAAGGATACACGAGGATCATTCGAAGCTGTGGGAGAAGGTTGGTTCACTCTTTCAAAAGAACGCTTTCAAACTGGAGAGATCCTCTTTCGGCCACGCATGGCAGGAGTGTGTACAATGGGATTGCACCAAGCTGTTGCACTTTGCATGGATCATTGCCATGATGCAGAACTAACAGGTGACGATAGTTGGTATAAAACTGTAGTCCTAGCTGGAGGCAGTGCATGTTTACCCGGACTTTCAGAAAGGTTACATAAGGAACTGTGTGGGCTTCTTCCTCCATCGAAGTCCAATGGAATAACAGTCATTCCTCCTACCTATGGACAAAACACTGCATGGTTTGGCGCAAAGCTTATCAGCAATCTGAGCTCCTTTCCTGGTCCCTGGTGCACAACAAAGAAGCAGTTCCGGCACAAGTCCAGACTCAACCTCATATGA 1398 45.14 MAMLLKRVWESVSSRSSGSKSDFSPSDRQLFVEFSLGEFDRLPLDILMQILRLIGPKEAAKMSFVCKSWKSLVSDNLLWIFFLHVQQEPWDSIFFAESHLASGYPLQTLSSNLSFMRIYGQRAQVPGSVIIDGGSGYCKFGWSKYACPSGQSATFLEFGNIESPMYSRLRYFFTTIYSRMRVKASLQPVVVSLPICHYDDTESAKASRRQLKETIYSVLFDMNVPAVCAINQATLPLYAARRTSGIVVNIGFQVTSIVPILHGKVMHKVGVEVVGLGALKLTGYLRELMQQSNIYFDSMYTVRVLKEKLCYVATDYEAELCKDTRGSFEAVGEGWFTLSKERFQTGEILFRPRMAGVCTMGLHQAVALCMDHCHDAELTGDDSWYKTVVLAGGSACLPGLSERLHKELCGLLPPSKSNGITVIPPTYGQNTAWFGAKLISNLSSFPGPWCTTKKQFRHKSRLNLI 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10138307 10142141 - Conep15aG0132400.1 Cone15ag1295 454423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1295 465 Gene3D - 233 431 - -
Cone15ag1295 465 SUPERFAMILY Actin-like ATPase domain 128 248 IPR043129 -
Cone15ag1295 465 Gene3D Actin; Chain A, domain 4 276 359 - -
Cone15ag1295 465 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515(InterPro)
Cone15ag1295 465 Pfam Actin 297 452 IPR004000 -
Cone15ag1295 465 Pfam F-box domain 39 80 IPR001810 GO:0005515(InterPro)
Cone15ag1295 465 CDD NBD_sugar-kinase_HSP70_actin 129 273 - -
Cone15ag1295 465 Gene3D - 32 104 - -
Cone15ag1295 465 SMART actin_3 126 456 IPR004000 -
Cone15ag1295 465 Gene3D - 172 456 - -
Cone15ag1295 465 SUPERFAMILY F-box domain 35 99 IPR036047 GO:0005515(InterPro)
Cone15ag1295 465 CDD F-box_AtARP8-like 38 82 - -
Cone15ag1295 465 PANTHER ACTIN 156 456 IPR004000 -
Cone15ag1295 465 SMART fbox_2 42 82 IPR001810 GO:0005515(InterPro)
Cone15ag1295 465 SUPERFAMILY Actin-like ATPase domain 242 453 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1295 K16616 - - cit:102623727 717.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1295 Cone-Chr15:10138307 Cone9ag1250 Cone-Chr9:9202192 8.58E-32 dispersed
Cone14ag1269 Cone-Chr14:10165879 Cone15ag1295 Cone-Chr15:10138307 2.30E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g673 . . . . . . . . . Cmo06g00682 . . . . . . . . . . . . . . Cla10g00404 Cam10g0401 Cec10g0423 Cco10g0413 Clacu10g0408 Cmu10g1240 Cre10g0657 . . Cone14ag1222 Cone15ag1295 . Csa03g00425 . Cme06g02755 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g00494 . . .
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38