Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1296 ATGTCCCAATACCAAGGGGACGACGCTGATCACACAGCCGATGAGTATGAAATGGAAGACGTGGATGATGATATGGAGGAAGAATTGGGAGGGAGAGAAGTGGGAGGCTCAGAGTCTGATGTTGATGAATATGATCCGAGTAATAGAATAGTTGATACGACTGCATCTCAAGTAAGAAGAGGGAGAGATATCCAGGGAATTCCTTGGGATATGCTTAGTATAACTAGAGAGAAATACCGGCAAACTCGACTAGAGCAGTACAAGAACTATGAGAACATCCCCAACTCAGGGGAGGGATCAGGCAAGAATTGCCAAGTTACGAAGAAAGGATTCCATTATTATGACTTTCGGCGAAATTCAAGATCTGTCAAGTCAACTATTCATCATTTCCAGCTGAGGAACTTGGTATGGGCTACATCAAAGCATGATGTCTATCTCATGTCACATTTTTCTGTTACTCATTGGTCTTCGTTAACTTGCACCAAGTCTGAAGTTCTTAATGTTCAAGGCCACGTGGCCCCGATAGAGAAACATCCTGGCAGTCTATTGGAGGGTTTTACACAGACCCAAGTGAGTACACTTTCAGTGAAAGATAAGCTGCTAGTTGCTGGAGGATTCCAGGGAGAACTTATTTGCAAGCATCTAGATCGTCCAGGTGTTAGCTTTTGTTCCAGGACAACTTATGATGATAATGCCATAACCAACGCTGTTGAGATTTATGCCACACCCAGTGGTGCAATTCACTTCACTGCTTCAAATAATGACTGTGGTGTCCGAGACTTTGATATGGAGAAATTCTTGCTTTCTAAGCATTTCCGTTTTCCTTGGCCAGTGAATCATACTTCCCTGAGCCCAGATGGTAAGCTTCTTGCAATTGTTGGAGATAACCCAGAGGGTATGTTGGTTGACTCGCAAACTGGGAAGACAGTAATGCCTTTGTGTGGACACTTGGATTTTTCTTTTGCATCAGCATGGCACCCAGATGGCATCACCTTTGCCACTGGAAACCAGGACAAAACTTGTCGGGTTTGGGACATAAGAAACCTGTCCAAATCTGTGTCTGTTTTAAAAGGCAATCTTGGAGCTGTTCGGTCAATCAGATATACTTCTGATGGTCGATACATGGCAATGGCAGAACCTGCAGACTTTGTGCATGTATATGATGTGAAGAATGGCTACGAGCAGGAACAGGAAATTGATTTCTTTGGTGAGATATCTGGCATATCATTCAGTCCAGACACCGAGTCACTTTTTATCGGAGTATGGGATCGTACATATGGTAGCCTCTTTGAGTATGGACGAAACCGGAACTACTCATACCTGGATTCCTTGTTTTGA 1338 43.65 MSQYQGDDADHTADEYEMEDVDDDMEEELGGREVGGSESDVDEYDPSNRIVDTTASQVRRGRDIQGIPWDMLSITREKYRQTRLEQYKNYENIPNSGEGSGKNCQVTKKGFHYYDFRRNSRSVKSTIHHFQLRNLVWATSKHDVYLMSHFSVTHWSSLTCTKSEVLNVQGHVAPIEKHPGSLLEGFTQTQVSTLSVKDKLLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAVEIYATPSGAIHFTASNNDCGVRDFDMEKFLLSKHFRFPWPVNHTSLSPDGKLLAIVGDNPEGMLVDSQTGKTVMPLCGHLDFSFASAWHPDGITFATGNQDKTCRVWDIRNLSKSVSVLKGNLGAVRSIRYTSDGRYMAMAEPADFVHVYDVKNGYEQEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLFEYGRNRNYSYLDSLF 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10143063 10146990 + Conep15aG0132500.1 Cone15ag1296 454424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1296 445 SUPERFAMILY WD40 repeat-like 197 425 IPR036322 GO:0005515(InterPro)
Cone15ag1296 445 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 441 - -
Cone15ag1296 445 SMART WD40_4 306 345 IPR001680 GO:0005515(InterPro)
Cone15ag1296 445 SMART WD40_4 349 388 IPR001680 GO:0005515(InterPro)
Cone15ag1296 445 MobiDBLite consensus disorder prediction 12 29 - -
Cone15ag1296 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 348 - -
Cone15ag1296 445 Pfam WD domain, G-beta repeat 310 345 IPR001680 GO:0005515(InterPro)
Cone15ag1296 445 Gene3D - 223 440 IPR015943 GO:0005515(InterPro)
Cone15ag1296 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 354 IPR001680 GO:0005515(InterPro)
Cone15ag1296 445 MobiDBLite consensus disorder prediction 30 46 - -
Cone15ag1296 445 MobiDBLite consensus disorder prediction 1 46 - -
Cone15ag1296 445 FunFam WD-40 repeat family protein 226 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1296 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1296 Cone-Chr15:10143063 Cone18ag0895 Cone-Chr18:6332936 7.41E-217 dispersed
Cone14ag1270 Cone-Chr14:10167595 Cone15ag1296 Cone-Chr15:10143063 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g783 Blo03g00480 Blo03g01493 Bda07g00435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1270 Cone15ag1296 . . . . . . . . Bpe11g00613 . . Bma14g00658 . . Cmo09g00636 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000780 3 4 6 6 3 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 2 2 2 2 3 2 1 11 7 2 91