Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1297 ATGGCAGCAAGCTCTTCATCCGCCGCCCTGTTCTCCGCCCCAACCTTGTCATCCACCACCAACAAGCCTTCCGTCCTCAACGTCTCTTTCCAAGGTCTCAGGCGTCTCCCCACAAACCAGGCAGTGAGCAAATTGAGGTTAGGTAGCCCCTCAAAAGCAAGTAAGAGAGGGAGGTTCAACGTAGTGAAGGCAGAGCTGAGTACACCTCTGGTGATAAGCCTGAGCACAGGGCTGTCTCTGTTCCTAGGGAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAACGTGGCGAAACAGGGGTTGCCGGAGCAGAATGGGTTGAGCCACTTCGAGGCGGGCGATGCGAGGGCCAAGGAGTATGTGAGCCTGCTCAAATCCAATGACCCAGTTGGGTTCAACATTGTGGATGTCCTTGCTTGGGGTTCCATTGGCCATATTGTTGCTTACTATATATTGGCCACCACTAGCAACGGCTATGATCCCAAGTTCTTTGATTGA 495 52.93 MAASSSSAALFSAPTLSSTTNKPSVLNVSFQGLRRLPTNQAVSKLRLGSPSKASKRGRFNVVKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGLSHFEAGDARAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATTSNGYDPKFFD 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10147573 10148067 + Conep15aG0132600.1 Cone15ag1297 454425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1297 164 NCBIfam photosystem I reaction center subunit V 71 159 IPR017494 GO:0009522(InterPro)|GO:0009535(InterPro)|GO:0015979(InterPro)
Cone15ag1297 164 PIRSF PsaK 1 164 IPR016370 -
Cone15ag1297 164 Gene3D - 68 163 IPR023618 GO:0009522(InterPro)|GO:0015979(InterPro)
Cone15ag1297 164 FunFam Photosystem I reaction center subunit V 68 163 - -
Cone15ag1297 164 Pfam Photosystem I psaG / psaK 67 158 IPR000549 GO:0009522(InterPro)|GO:0015979(InterPro)|GO:0016020(InterPro)
Cone15ag1297 164 ProSitePatterns Photosystem I psaG and psaK proteins signature. 130 147 IPR000549 GO:0009522(InterPro)|GO:0015979(InterPro)|GO:0016020(InterPro)
Cone15ag1297 164 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 6 162 IPR016370 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1297 K08905 - - mdm:139189278 220.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1271 Cone-Chr14:10171705 Cone15ag1297 Cone-Chr15:10147573 1.66E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g784 . . . . . . . Bma13g01142 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1271 Cone15ag1297 . . . . . Blo10g00889 . Bda12g00989 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011324 1 1 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 2 2 1 1 1 1 1 1 1 0 2 1 1 31