Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1298 ATGTCGATCCTTCTTCCTCCTCCTCCTCATCATCTGTCTGACAGTGGGTCTGCTCTCATTTCCGCTCAGCCTCAAGACTCTCATGGACTTCCTAGCAAACCCCCCGCCGCCGCCGCCACTCAGCCTTACCCCCCTGCCACCGCCAATTACGACCAAGTTGCTCAAAGCTCCCAACTTTTCTGGGAAAAGCTCGAGGCTTTTCATCGCTCCTTTGGTACCAAGTTCACGGTTCCTACTGTAGGAGGGAAGGCTCTGGATCTACACTGCCTTTTTGTGGAGGTCACTTCTCGAGGTGGCCTTGAAAAGGTGATAAGGGACCGTAAATGGAAGGAAGTGGTTATGGTATTCAAATATCCAATCACAATCATCGGTTCATCATTTGTCCTGCGCAAGTACTATCAGTCATTCCTTTTTCACTTTGAGCAGGCTTATTACTTCCGCAAGCAGTTTCCTCCCTCAATGCCTGGTTCTGTAAACGGAAGCCTTGTCCATGAAGGTGCTACTGTAAACCAGTTACAGGGTCAGGAATGTCCAATAGTGCAGCCTGGTGGATGGGTGACTGGAACTATCAATGGGAAATTTGATAATGGATACCTCTTTACTGTCAATTTGGGTTCAACTCAGCTGCATGGCGTCTTGTATCATGTTCCAGAGCATGGGGCTCATAAAATTCGGGCCAGGCGACCTCGTCTATATCAGAAGAGATTGAAGTTGGCATTGCGAGATCCATCTAAGCCCAAGTCAAACAGGAGTGGGCATTATGGGAGGCTAAAACCTTATTACCACAGGCAAGAGAGAGCTATCAACAAGAAGATTGGGGTCCTGTGGAATAATATCACCGAAGCAGAAAAGCAGGCATATCATGAAAAAGGAGTGAGAGACGAGGAGGGGCACAAGAATGAGATGTTAGAATACAAATCTTCTAATGCTTCACAAGGGCAATCATAA 948 47.47 MSILLPPPPHHLSDSGSALISAQPQDSHGLPSKPPAAAATQPYPPATANYDQVAQSSQLFWEKLEAFHRSFGTKFTVPTVGGKALDLHCLFVEVTSRGGLEKVIRDRKWKEVVMVFKYPITIIGSSFVLRKYYQSFLFHFEQAYYFRKQFPPSMPGSVNGSLVHEGATVNQLQGQECPIVQPGGWVTGTINGKFDNGYLFTVNLGSTQLHGVLYHVPEHGAHKIRARRPRLYQKRLKLALRDPSKPKSNRSGHYGRLKPYYHRQERAINKKIGVLWNNITEAEKQAYHEKGVRDEEGHKNEMLEYKSSNASQGQS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10148603 10150516 + Conep15aG0132700.1 Cone15ag1298 454426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1298 315 MobiDBLite consensus disorder prediction 286 303 - -
Cone15ag1298 315 Gene3D High mobility group box domain 224 315 IPR036910 -
Cone15ag1298 315 MobiDBLite consensus disorder prediction 286 315 - -
Cone15ag1298 315 SMART ARID_2 51 141 - -
Cone15ag1298 315 SUPERFAMILY HMG-box 232 309 IPR036910 -
Cone15ag1298 315 MobiDBLite consensus disorder prediction 1 44 - -
Cone15ag1298 315 ProSiteProfiles ARID domain profile. 54 145 IPR001606 GO:0003677(InterPro)
Cone15ag1298 315 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 36 314 - -
Cone15ag1298 315 Gene3D - 45 155 IPR036431 GO:0003677(InterPro)
Cone15ag1298 315 Pfam HMG (high mobility group) box 266 306 IPR009071 -
Cone15ag1298 315 SUPERFAMILY ARID-like 51 152 IPR036431 GO:0003677(InterPro)
Cone15ag1298 315 CDD ARID_HMGB9-like 56 141 IPR045303 GO:0003677(InterPro)
Cone15ag1298 315 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 306 IPR009071 -
Cone15ag1298 315 SMART bright_3 55 146 IPR001606 GO:0003677(InterPro)
Cone15ag1298 315 Pfam ARID/BRIGHT DNA binding domain 57 141 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1298 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1298 Cone-Chr15:10148603 Cone7ag1916 Cone-Chr7:12263604 3.86E-58 dispersed
Cone14ag1272 Cone-Chr14:10172910 Cone15ag1298 Cone-Chr15:10148603 6.22E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g785 . . . . . . . Bma13g01143 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1272 Cone15ag1298 . . . . . . . Bda12g00990 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44912 PF00169 PH 9.60E-06 CL0266 Cone TR