Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1300 ATGGCCTTGCCAGGGGAAGCTTCAAAATCTAGCTCAACTGGGCTGTCTATCAAGACAACCCCACATTTGGCTTCTTCAAACCTAAACAATCATCAGATGGAACCATCTCCCTACAACTCTCCCTCCCTTGTCTCCCCCCCTTCTTCTGCATTTGTTTCAGCCTTACAGTCTCCTTACATTTCTCCCAGGGCCACCGGCCCAGAACCTCCGGCCAAGCCCATTCCCCCGAGCCAGTGCGAATGTTCGGACGACATTCCGAGCCGTTCCTACACTCCCCCTTCTGACCACTACGAATTTTCCGACGGCCCGCCGCTCAAGTTTGTTACTTGCAGCATGGGGGATGCACCTGCCTCTGCCCCTCCCCGCATCTCATTCTCTTTCCCAGTGCCCCGGATTTCGTTCGGCAAAGGAGGAGGTGGAGGAGGCCTCATCTCTCCTGCTTCCACCAATGCCAAAATCAGGAGTTGTGATGTTTATATTGGCTTCCATGGCCACAATCCCAATCTAGTGCGCTTCTCAAAGTGGCTCAAATCAGAGCTTGAGCTTCAGGGGATTGCTTGTTTTGTTGCTGACAGGGCCAAGTACTCTGATAATCAGAGCCACGAGATTGCAGACCGAGTTATCTGCTCCGTTGCATTTGGGGTTGTGGTCGTCACCAGCTCTTCCTTCTACAACCATTTCAGTATGGAGGAGATCAGATTCTTTTCACAGAAGAAGAATCTCATCCCCATCTTCTTCAACTCGGATCCTGCTGAGATCATGAGCCTTCTCAGCTACAATTCAGTGGATAAAGAATGCAAAGAGGCAGTCAATGGGTTAATCAAGTGCCATGAGTTCAAATTGGAAGCCAATGAGGGCAACTGGAGGAATTGCCTCTCCAGAACTGCTGGCATCTTGCGAGCTAAGCTGGGCAGGAAGAGCGCGGTTGGGGCCGATCTTGAAAGACTTGAGGACCTCCCTTTCCCCAGGAACAGGTATTTTGTGGGAAGGGAGAAGGAGATGATGGAAATAGAAACCGCCTTGTTCGGGTGTAGCGGGGAGTCTACTGACAAGGAGTATTCGACGTCTGCGTCAAGCTTTAAGGGCGAAACGAGCAGGCAATCTGAAGGCCAAGCAGATGAGGAGACTGACTCTGTGGCTACCACCGACACAGAACGATATATTAGTTTGGAGATTGGAAAGTCTAGAGAGCTAGCTTTAGAGGCCTGGGTTGAACAACCGCCGGTTATTGGCAGTAATTCACTGAGTAGGTCAAGATACAGGGAATATTCTAAATGTGTGAAGAAGAAGACCTCGGGTTGCAGTGTGATTTGTGTTCATGGGGTTCCTGGCATTGGAAAGACGGAACTTGCTCTGGAATTTGCATACAGATATGCCCTGAGATACAAAATGGTTTTGTGGGCGGGTGGTGAGGCCCCCTATTTCAGGCAGAACATATTGAACCTGTCCATGTGCTTGGGACTAGATGTTAGTGCTGACGAGAAGGAAAGAGGGCGAATTCGAAGCTTTGAAGAGCAGGAACTCGAAGCGTTCAAAAGAGTGAAGAAGGCTCTTTTCCGAGACATGCCTTATTTACTGATTATTGACAATCTCGAGACGGAGAAGGAGTGGTGGGAAGGGAAGGATTTACATGATTTGATCCCGCGGAACACTGGAGGGTCCCACATCATTATCACTACTAGGCTGCCCAAGGTGATGAGTTTTGACGCCATGCAGCTTCTCCCATTGCCCTTCACTGAAGCAATGGTTCTGATCAGAGGAACAAGGAAGAAAGACTATCCTGCTGAGGAGCTGGAATACTTGAAGAAATTCGATGAGAAACTAGGACGATTGAGTTATGGTTTGTGGGTGATAGGGTCACTGCTCTCTGAACTTGGAATCACCCCCTCTTCTCTTTTTGAAACTATAAGCCAAGTGCCAATTGATGAAGCCTCTTCTACTTGTACTCATATAAGCATCAATGAAGACCAGTACTGCAAAAACAATCATTTCCTGATGAAGATGATATACTTTTGCTATGCACTCACCCAGAAAACTGAAAGCAGAAAGTATGTCATTGCATCAAGAATGCTCCTTGTGGGTGCCTGGTTCGCCCAAGCCCCTATTTCGGCCACTCTGTTAACTGCTGCTGCAAACAACATGCCTGCTGCCTTACCAAAGGGATTGGGGAAGTGGGCCGAATGCCTGAGCCTTTCATTCAGTTGCTGCCCCTGCTTATCTTCACAGAGTTGCAAGAGCGAGGAAGATGCTGCGCATTTTCTGATCAAACTAGGACTCGCACAGAGGGCAAATCGCAGGAAGTATCAACACGCTGTAGCAGGTCTATGGATTCAGTTCCATCCCATTACTCAGTTGTTTTTCAAAAGGAAGGAAGGAGGTTTAGCGGGAGCAAGATCAACCGTTGAAGGTGTGAGGAAGGCGGGTAATCCATTGGCGAGCTTTGAACACTTGTGGGCTTCTGCATTTCTAGTGTTTGGTTTCAAATCAGAACCTCCATTGGTCCAACTGAAGGCCCTTGATCTGGTTCTGTACATAGGAAGGACGGCACTCCCTCTTGCCATAAGGGCCTTCACGAGCTTCTCAAGATGTATCTCGGCATTGGAGCTGCTGAAGGTGTGCACGAATGCGCTGGAAGAAGTTGAGAAGTCATTTGTGTGTCAGATACAAGATTGGTGCCAGATGGAGTACTCACTCTGCTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGGAGGAGACGGAGAAGGCAGTACAGAGGGTGGACGAAGATGTGTGGCAGGATGTGACGCTGCTCAAGGCCACATTACTTGAAACGAGGGCGAAGTTGCTACTGAGGGGAGGGTATTTCGACAGCGGTGAAGAATTGTGTAGAACTTGCATCAGTATAAGAACTGTTATGTTGGGGCACAACCATGTTCAAACCGTGGCAGCTCAAGAGACATTAGCCAAGTTGGTGAGAATGAGAAGCAAGATCTAA 3000 48.5 MALPGEASKSSSTGLSIKTTPHLASSNLNNHQMEPSPYNSPSLVSPPSSAFVSALQSPYISPRATGPEPPAKPIPPSQCECSDDIPSRSYTPPSDHYEFSDGPPLKFVTCSMGDAPASAPPRISFSFPVPRISFGKGGGGGGLISPASTNAKIRSCDVYIGFHGHNPNLVRFSKWLKSELELQGIACFVADRAKYSDNQSHEIADRVICSVAFGVVVVTSSSFYNHFSMEEIRFFSQKKNLIPIFFNSDPAEIMSLLSYNSVDKECKEAVNGLIKCHEFKLEANEGNWRNCLSRTAGILRAKLGRKSAVGADLERLEDLPFPRNRYFVGREKEMMEIETALFGCSGESTDKEYSTSASSFKGETSRQSEGQADEETDSVATTDTERYISLEIGKSRELALEAWVEQPPVIGSNSLSRSRYREYSKCVKKKTSGCSVICVHGVPGIGKTELALEFAYRYALRYKMVLWAGGEAPYFRQNILNLSMCLGLDVSADEKERGRIRSFEEQELEAFKRVKKALFRDMPYLLIIDNLETEKEWWEGKDLHDLIPRNTGGSHIIITTRLPKVMSFDAMQLLPLPFTEAMVLIRGTRKKDYPAEELEYLKKFDEKLGRLSYGLWVIGSLLSELGITPSSLFETISQVPIDEASSTCTHISINEDQYCKNNHFLMKMIYFCYALTQKTESRKYVIASRMLLVGAWFAQAPISATLLTAAANNMPAALPKGLGKWAECLSLSFSCCPCLSSQSCKSEEDAAHFLIKLGLAQRANRRKYQHAVAGLWIQFHPITQLFFKRKEGGLAGARSTVEGVRKAGNPLASFEHLWASAFLVFGFKSEPPLVQLKALDLVLYIGRTALPLAIRAFTSFSRCISALELLKVCTNALEEVEKSFVCQIQDWCQMEYSLCWKKKKKKKKKKKKKKKKKEEETEKAVQRVDEDVWQDVTLLKATLLETRAKLLLRGGYFDSGEELCRTCISIRTVMLGHNHVQTVAAQETLAKLVRMRSKI 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10159878 10162877 + Conep15aG0132900.1 Cone15ag1300 454428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1300 999 Gene3D - 412 571 IPR027417 -
Cone15ag1300 999 ProSiteProfiles TIR domain profile. 154 306 IPR000157 GO:0007165(InterPro)
Cone15ag1300 999 PANTHER DNA REPAIR PROTEIN RADA 149 992 - GO:0000725(PANTHER)
Cone15ag1300 999 MobiDBLite consensus disorder prediction 1 97 - -
Cone15ag1300 999 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 631 IPR027417 -
Cone15ag1300 999 MobiDBLite consensus disorder prediction 348 366 - -
Cone15ag1300 999 SMART AAA_5 433 588 IPR003593 GO:0016887(InterPro)
Cone15ag1300 999 MobiDBLite consensus disorder prediction 1 60 - -
Cone15ag1300 999 Coils Coil 900 931 - -
Cone15ag1300 999 MobiDBLite consensus disorder prediction 348 380 - -
Cone15ag1300 999 Gene3D - 150 314 IPR035897 -
Cone15ag1300 999 SUPERFAMILY Toll/Interleukin receptor TIR domain 155 257 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1300 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1300 Cone-Chr15:10159878 Cone8ag0290 Cone-Chr8:1686676 4.64E-183 dispersed
Cone14ag1274 Cone-Chr14:10185514 Cone15ag1300 Cone-Chr15:10159878 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g788 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1274 Cone15ag1300 . . . Cme06g02708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012625 0 1 0 0 0 1 1 1 1 1 3 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 2 29