Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1302 ATGTCTGCCGGGGAATACATCCATCAGACTCATCTTCTCAGATCACCGGAAGATAGAATTGCAGAGGATGACTTGGAGGTTCAACACGGACCCGCGGTTTTCACTCACCGCGACCGCGCCAGCCCCACTTCCAGCTCCGGTGCCTTCTTGGATCTATTTCAGCATTTGAATCGAGGTGCCTTCTCTGCTCGCCGCCATAGTTTTAAGCGTCTCGATAGAGACCGGGACAGGGAAATCACGACTCCTAGACCTGCAATCGAGCCGCATAATGATCTCAATCATCTTCATCATCCCCCTCCCACCGCCTCCGCCTCTGCTTCGGATCATGAAGATGCTCTTCCCGACACCACTCCTCCTGAATGGGCTCTTCTCCTTATTGCCTGCCTCCTCGGCCTTGCTACCGGTCTCTGTGTCGCTGCATTTAACAAGGGGGTGCATGTAATACATGAATGGGCCTGGGCTGGTACTCCAAATGAGGGGGCTGCCTGGCTTCGTTTACAGAGATTGGCAGATACTTGGCATCGAATTCTCTTAATACCGGTCACAGGAGGTGTTATTGTTGGCATGATGCATGGCTTAATTGAAATATTGGGCCAAATAAAACAATCCACTGCTTCCCAAAGCCAAGGCTTTGATTTTCTTTCTGGAGTCTTTCCCACAGTTAAGGCCATACAGGCTGCTGTCACTTTGGGTACTGGTTGTTCATTAGGTCCTGAAGGTCCTAGTGTAGATATTGGAAAATCGTGTGCAAATGGATTCTATGTAATGATGGATAACAACAGCGAAAAGATAAAAATAGCCTTTGTTGCGGCTGGAGCAGCTGCTGGAATTGCTTCAGGCTTTAATGCAGCAGTTGCTGGCTGCTTCTTCGCTATAGAAACTGTTTTAAGGCCTCAGCGTGCAGAAAACTCACCTCCTTTCACAACTGCAATGATCATTTTGGCCTCTGTTATATCATCAACTGTCTCAAATGTTTCACTTGGAACACAGTCTGCTTTTACAGTACCAGCATATGATTTGAAATCTGCGGCTGAATTACCTTTGTACCTCATATTGGGCATGCTATGCGGTGTTGTGAGTGTAGCAGTGACCCGCCTATCCACTTGGTTCACTAAGTTTTTTGAGTTTGTAAAGGACAGATTCGGCATCCCTGCTGTTGTCTGTCCTGCATTAGGTGGTTTAGGAGCTGGAATAATAGCTCTCAAGTATCCTGGAATATTGTATTGGGGCTTCACTAATGTTGAAGAAATCTTACATACTGGAAAGAGTGCTTCAGCTCCTGGTATTTGGCTATTAACTCAGCTAGTAGGGGCCAAAGTTGTGGCCACAACACTTTGCAAGGGTTCTGGGCTTGTGGGTGGACTTTATGCTCCAAGTCTGATGATTGGTGCTGCTGTTGGTGCTGTGTTTGGGGGTTCAGCTGCAGAAATCATCAACTCTGCCATTCCAGGAAATGCAGCTGTTGCACAGCCACAGGCATATGCGCTGGTTGGAATGGCTGCTACACTGGCTTCAGTTTGTTCAGTACCCTTGACATCTGTTCTACTTCTGTTTGAGCTGACAAAGGATTACAGGATACTGCTTCCACTCATGGGGGCTGTTGGATTGGCCATATGGGTTCCTTCAGTGACAAAACAGTCAAAGGAGATTGAAGCATCAGAATCTCGGAGTTCAGTTAGAGGTTATTCTTCTCTTGCACCTTCTGAAGATAAAGATGAAGTTATCTGGAACCACGATGAGGCTGGTATTGACTTGGAGCTCTCAGTTTTTGGGAATGCTTTAGATCGTGAAGTAATTTATGAAGATGTTCTTTTGGAAAAACTGAAGGTTTCTCAGGCAATGTCAAGGAACTTCCTGAAGGTTTCAATGGAAATGAACTTGAAAGATGTAATAAAATATATGAATGATAACCAGCAGAACTGTGCACTGGTTCTTGATGACGAAGATTTTCTTGAGGGAATACTAACAAAGGGCGATATTAGACGGTGTCTATCTAAAAAATCTGGCGACACTTTCAAGGGTGATGCAAGAGTATTAGATGTTGATACAAGTCAAGTGTCCTCTCTTTGTACACAAGGGATTAGCTATCGTGGGCGACAGCGTGGACTTTTAACCTGTTCCCCCAAAACTGATTTGGCGACGGCAAAGGATCTAATGGAGGCCAAAGGTATCAAGCAACTGCCTGTGGTTAAGCGAGGTGGAGAGTCACGAAAAGAAAGGAAGCAAAGAGTTGTTGCTATTCTGCATTATGATTCCCTTTGGAACTGTCTCAGAGAGGTTGTAAATTGTCATAAATCTGTCTACCAGCAAAGGAAAGAGAAAAACACTGAAGAGAAGAGTGCAAACGATCATTAG 2355 45.48 MSAGEYIHQTHLLRSPEDRIAEDDLEVQHGPAVFTHRDRASPTSSSGAFLDLFQHLNRGAFSARRHSFKRLDRDRDREITTPRPAIEPHNDLNHLHHPPPTASASASDHEDALPDTTPPEWALLLIACLLGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLIEILGQIKQSTASQSQGFDFLSGVFPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFYVMMDNNSEKIKIAFVAAGAAAGIASGFNAAVAGCFFAIETVLRPQRAENSPPFTTAMIILASVISSTVSNVSLGTQSAFTVPAYDLKSAAELPLYLILGMLCGVVSVAVTRLSTWFTKFFEFVKDRFGIPAVVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLVGAKVVATTLCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQSKEIEASESRSSVRGYSSLAPSEDKDEVIWNHDEAGIDLELSVFGNALDREVIYEDVLLEKLKVSQAMSRNFLKVSMEMNLKDVIKYMNDNQQNCALVLDDEDFLEGILTKGDIRRCLSKKSGDTFKGDARVLDVDTSQVSSLCTQGISYRGRQRGLLTCSPKTDLATAKDLMEAKGIKQLPVVKRGGESRKERKQRVVAILHYDSLWNCLREVVNCHKSVYQQRKEKNTEEKSANDH 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10173264 10178377 + Conep15aG0133100.1 Cone15ag1302 454430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1302 784 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 PRINTS Chloride channel signature 492 508 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 PRINTS Chloride channel signature 222 241 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 PRINTS Chloride channel signature 451 471 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 PRINTS Chloride channel signature 510 529 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 SMART cbs_1 702 758 IPR000644 -
Cone15ag1302 784 SMART cbs_1 617 665 IPR000644 -
Cone15ag1302 784 CDD Voltage_gated_ClC 134 537 - -
Cone15ag1302 784 Pfam Voltage gated chloride channel 201 540 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone15ag1302 784 MobiDBLite consensus disorder prediction 72 94 - -
Cone15ag1302 784 FunFam Chloride channel protein 111 556 - -
Cone15ag1302 784 Pfam CBS domain 702 733 IPR000644 -
Cone15ag1302 784 Pfam CBS domain 610 665 IPR000644 -
Cone15ag1302 784 ProSiteProfiles CBS domain profile. 614 671 IPR000644 -
Cone15ag1302 784 SUPERFAMILY Clc chloride channel 118 544 IPR014743 -
Cone15ag1302 784 Gene3D Clc chloride channel 110 559 - -
Cone15ag1302 784 SUPERFAMILY CBS-domain pair 603 734 IPR046342 -
Cone15ag1302 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 59 772 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Cone15ag1302 784 MobiDBLite consensus disorder prediction 72 115 - -
Cone15ag1302 784 Gene3D - 595 757 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1302 K03281 - - csv:101212254 1044.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1302 Cone-Chr15:10173264 Cone8ag1351 Cone-Chr8:10839315 2.19E-100 dispersed
Cone12ag1281 Cone-Chr12:9785923 Cone15ag1302 Cone-Chr15:10173264 1.40E-122 wgd
Cone14ag1276 Cone-Chr14:10209468 Cone15ag1302 Cone-Chr15:10173264 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43