Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone15ag1303 ATGACAGGGACCAATGAAAATATGGCTGCTGCTGGAGATTGGTTGCCACCTGATCATAGCTCAAGAGGTTTTTTCACGGCATCCTTAGATGAAGATGTTGGCTTGGAATGCACCATGAAAACTGTCAGTCATAGAACTGAGGAACTCTTTCTAGGACCGAAGGAGCAGAAATCAAACTCTCAGGGGGGACTTGTGGAGAGGATAGCAGCTAGAGCTGGATTCAATGCCCCAAGATTGAACACTGAAGGCATTAGATCAGTTGACCTCTCACTGAATTCTGATGTTAGGTCCCCTTACTTGACCATACCAACCGGCCTTAGTCCAACTACACTGCTTGATTCTCCCGTTTTCCTTTCTAATTCACTGCATGCTCAGCCATCTCCAACAACAGGAAAGTTTATTTGTACCAGCAGGAACTCCATGTGGATGTCAGAGTCGATTGATAAAGGTAGATTTAGTCTCCTTGATGATTCCAATACCTCGTCATTTGCTTTCAAGTCTGGAGGGGAATCGGGCTCTCCTTTCCTTTTCGGTGCATTATGCAAAATGGCTCCATCTTTACTTCATCTGCAATCTTTTCCTACGATTGAGGGTTTGATACTGTCAGAAAATTCCATTCAATCTCATAGTGCAGAACCATGCAATGCATCAACTCAAGATAGAAATGGTGTTCATCCATGTGCAGATTTCTCCCAGTCATGCACAGAAAATGACATCCGAGTTAATAATATAGCAGGAGATCAGAGACCTATAGAAAATTCTCCATCACTAGATGAGCAAGCAGATGAAGAAGGAGAGCAGAGAGGCAGTGGAGATTCTGTGATTTCTGGCTCTTGTGGGGCCCCATCCAAGGATGGATATAATTGGAGAAAATACGGACAAAAACAAGTAAAAGGCAGTGAGTTTCCACGAAGTTACTACAAGTGCACTCATCCAAACTGTCAGGTCAAAAAGAAGGTAGAACGGTCTATTGAGGGCCTTATAACAGAGATCATCTATAAAGGGGCCCATAACCATCCTAAGCCTCCTTCAAGTCGCCGATCAGCCATTGGTTCATCTAACCATCAAGCTGACATGCAACTAGAGATGCTTGAGCAAGGTGGGTCACAAAATGTTGAAGATGATGATCCAACCTGGGCAAGGGCAAGCATTCAAAAAGGGAACCTTGCAGGAGCCCCTGATTGCACGCATGACGGCATTGAGGTGACATCATTGGCAGCTGTTGGTGGTAATGAATTAGGAGATGCCGTTGATGACTCATCCACATTTTCTAATGATGCTGATGCTGATGATGAAGAAGAAGAAGATGGGGTTACCCATGCTAGTGTATCCTTAGGTTTCGTAGGTGAGGGGGATGAATCTGAGTCGAAAAGAAGGAAAGTTGAAGCCTATGCTACAGAAATGAGTGGGGCCACAAGAGCGATAAGGGAACCTAGAGTTGTGGTCCAGACGACAAGTGCAGTAGATATACTTGATGATTCCTATCGCTGGCGGAAATATGGACAGAAAGTGGTTAAAGGAAACCCAAATCCTAGGAGCTACTACAAGTGCACAAATGCCGGTTGCACAGTGAGGAAGCATGTTGAGAGGGCATCACATGACCTCAAATCAGTAATCACGACCTATGAAGGAAAGCACAACCATGACGTTCCTGTCGCTCGTAACAGCAGCCACTCCAACTCTGGCATGCTGGGTTCTGTACCTGCTCAAAGGCCTCATCTCCGGCCACCTGAGATGTCCCAGATGCACAACGGCAAGCCAAGATTTGAAAGGCATGCTGCTGCAGTCGCTCCGTTTGGAAGGCACCAGGTGGGTCCTACTCCTTCCCATGGCTTCTCTTTTGTAATGGCTCAACCAGGCCTTGCAAATCTGGCAATGGTACAACCCAGGCTTCCTCCTGGTCTGCCCATTCATCCATATTTGGTGCCACATCATCACCAGACTAATGAAATGGGCTTTTTGTTACCAAAAGGAGAAGCCAAGTTAGAGCCATCGTCCGATCCTGGTCTGAACCTATACAATGGTTCATCCATATATCAGAATATAATGAGTAGGCTTCCACTTGGACCTTAG 2073 45.88 MTGTNENMAAAGDWLPPDHSSRGFFTASLDEDVGLECTMKTVSHRTEELFLGPKEQKSNSQGGLVERIAARAGFNAPRLNTEGIRSVDLSLNSDVRSPYLTIPTGLSPTTLLDSPVFLSNSLHAQPSPTTGKFICTSRNSMWMSESIDKGRFSLLDDSNTSSFAFKSGGESGSPFLFGALCKMAPSLLHLQSFPTIEGLILSENSIQSHSAEPCNASTQDRNGVHPCADFSQSCTENDIRVNNIAGDQRPIENSPSLDEQADEEGEQRGSGDSVISGSCGAPSKDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSIEGLITEIIYKGAHNHPKPPSSRRSAIGSSNHQADMQLEMLEQGGSQNVEDDDPTWARASIQKGNLAGAPDCTHDGIEVTSLAAVGGNELGDAVDDSSTFSNDADADDEEEEDGVTHASVSLGFVGEGDESESKRRKVEAYATEMSGATRAIREPRVVVQTTSAVDILDDSYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPVARNSSHSNSGMLGSVPAQRPHLRPPEMSQMHNGKPRFERHAAAVAPFGRHQVGPTPSHGFSFVMAQPGLANLAMVQPRLPPGLPIHPYLVPHHHQTNEMGFLLPKGEAKLEPSSDPGLNLYNGSSIYQNIMSRLPLGP 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 10178582 10182177 - Conep15aG0133200.1 Cone15ag1303 454431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone15ag1303 690 ProSiteProfiles WRKY domain profile. 285 342 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 FunFam WRKY transcription factor 273 343 - -
Cone15ag1303 690 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 221 574 IPR044810 GO:0003700(InterPro)
Cone15ag1303 690 Gene3D WRKY domain 478 544 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 Gene3D WRKY domain 272 343 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 FunFam WRKY transcription factor 33 478 544 - -
Cone15ag1303 690 SUPERFAMILY WRKY DNA-binding domain 483 551 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 MobiDBLite consensus disorder prediction 411 459 - -
Cone15ag1303 690 SUPERFAMILY WRKY DNA-binding domain 282 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 MobiDBLite consensus disorder prediction 246 282 - -
Cone15ag1303 690 Pfam WRKY DNA -binding domain 492 549 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 Pfam WRKY DNA -binding domain 284 340 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 ProSiteProfiles WRKY domain profile. 486 551 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 MobiDBLite consensus disorder prediction 334 353 - -
Cone15ag1303 690 SMART WRKY_cls 283 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone15ag1303 690 SMART WRKY_cls 491 550 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1303 Cone-Chr15:10178582 Cone3ag0629 Cone-Chr3:3107909 5.64E-103 dispersed
Cone14ag1277 Cone-Chr14:10214634 Cone15ag1303 Cone-Chr15:10178582 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44913 PF00076 RRM_1 2.00E-12 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone15ag1303 K18835 - vvi:100261730 792.727