Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0013 ATGGAATGCAATAAAGATGATGCCATTAAGGCAAAGGAGATTGCTGAGAAGAAGTTTGCAGAGATGGACACAACCGGTGCAAAAAAAGTTGCTTTAAAGGCCCAAAACTTGTATCCCACTCTTCAAGGCCTTGCTCAATTTATAGCAACCCTTGACGTCTACATCTCTGCTGAGAAAAAACTCTGCGGGGAAGCTGATTGGTATGGCGTTCTTGGTGTGAAACCCACAGCAGATGATGACACGATAAGAAGACGGTATCGAAAATTAGCCCTCATTCTTCATCCTGACAAAAACAAATCCGTAGGTGCAGATGGGGCTTTCAAAATCGTATCTGAAGCCTGGAGTTTACTGTCTGATGAATCCAAGAGAAGTAAATATGACCAGAAGCGCAATTCAACTACCTCAGAGGCGACTGGCCGGAACAGTTTCTGTAACAGTGACAAATCAGGCACATCTGTCAGGAAAAATTCTACTGCTCACTTCAAGCCTACTATTCCAGCTCCTAAGCCATTGAAACCCACGTTTTGGACATTGTGCAAAGAATGCAAAATGCAGTTCGAGTACTTCAGAATTTACATCAATAATAAACTCCGTTGTCCCAACTGCAGCAAGTCATTCCGAGCCGTTGAGATACCAAATCCACCATTAAATGCTAATCATTTGTCTACTCCATGGAGATCCAACAAGCAGCAACAAAGTTCTGATCCATATAACAATACAAACAAGAAATCATGCTCTGGAGGAAAAACTGCGACTTCTGTTACCAATCTTGGGAAAAAGATGGGGAAAGAAGAGATGAATCAAGCTGCTACGAAAGATAAGTATAATCAGAGAAAAACTCACGCTTCCAAGAAATCTGGGGATGTTGGTGGTTTAGCCAATGGATTTTCCAATATGAGTTCCAACTTTGTAGCAAAAGAAGATGGTCATGGGCCAAAGAAAAAACGACGGGTAGAAGCAAATAATAGCACCGTTAATGGCTCGGAGAATCAAATGTCCATGGGAAATGGTGGAGTTTCCAAGGAAAGTACTTTTGAATCTCAAAAGTGCAATCGTTCTTCTCAAACAGGAAAGACAACCCTTTCTAGAAATAATGCATGTAGGAGGGAACTTTCACAGTTCGAAATCCGTAACATGTTGATAGAGAAGGCTAAGCATGAGATCTGGCAGAAGATAAAAGAATGGAAAGCAGATGGTACCTTCACCAATTCACATATATTAGAAAGTGCAGATAAGGAGGAGAAAAAGATTCTGGATAGCAAGAAAGGATTGAACAATAAGAAAGATTATTCTCCAAATTCAAAAGGCACGGATCCTCTCTCAATGACTGTACCCGACCCTGATTTTCATGATTTTGATAAGGATCGAACAGAGTATTCATTTGGTAACAATCAGGTGTGGGCTGTTTATGATGATGATGATGGTATGCCTCGGTATTATGCTATGGTCCATAACAGGATATGTATAAAGCCGTTCAAAATCCGGATCAGTTGGCTTAATTCCAAAAACAACAACGAATTTGCTCCCTTAAACTGGATTGGCTGTGGCTTTCCGAAAACTGGTGGGGAATTCTGGATAGGCAAGCATGAAATGAATAACTTCCTGAATTCATTCTCGCACAGGGTTAAGCACTGGACAAAAGGCTCGAGAGGAGCCATCCAAATATACCCTCAAAAAGGAGATGTCTGGGCTCTATACACCAACTGGTCTTCTGATTGGAACGAGTTAACACCAGATAAAGTCGTACACAAATATGATATGGTGGAAGTGCTTGAAGATTACAGTGAAGAGAAAGGTGTAACTGTTGTTCCATTAGTTAAAGTTTCCGGTTTCAAGACGGTGTTTCAAAAACACTTGGACCCTAGTAAGATCAGGAGAGTTCCACGGGAAGAGATGTTCCGATTCTCTCACCAGGTCCCATCTCACTTGCTTACAGGTCTTGAAGGCCACAATGCTCCTGTAGGTTTCCTAGAGCTTGATCCTGCTGCCACACCTCTGGAGCTTCTTCTTGTCGGGAAAAACGCTCGGAATGAAGAAAGTGGTGAAAAAGAAGCTGCGAAGGACAAGAAGAACCCGATGAAGGCTGGAAATAAGGGTGTGGAGAAGATGATTGTATATAGCCGGAAACGGTTTAAGAGGAGGGGGAAAATGATGCGAGTGGACTCTGAGATCTCTAGTTTATTAATAGATGAATGA 2196 41.89 MECNKDDAIKAKEIAEKKFAEMDTTGAKKVALKAQNLYPTLQGLAQFIATLDVYISAEKKLCGEADWYGVLGVKPTADDDTIRRRYRKLALILHPDKNKSVGADGAFKIVSEAWSLLSDESKRSKYDQKRNSTTSEATGRNSFCNSDKSGTSVRKNSTAHFKPTIPAPKPLKPTFWTLCKECKMQFEYFRIYINNKLRCPNCSKSFRAVEIPNPPLNANHLSTPWRSNKQQQSSDPYNNTNKKSCSGGKTATSVTNLGKKMGKEEMNQAATKDKYNQRKTHASKKSGDVGGLANGFSNMSSNFVAKEDGHGPKKKRRVEANNSTVNGSENQMSMGNGGVSKESTFESQKCNRSSQTGKTTLSRNNACRRELSQFEIRNMLIEKAKHEIWQKIKEWKADGTFTNSHILESADKEEKKILDSKKGLNNKKDYSPNSKGTDPLSMTVPDPDFHDFDKDRTEYSFGNNQVWAVYDDDDGMPRYYAMVHNRICIKPFKIRISWLNSKNNNEFAPLNWIGCGFPKTGGEFWIGKHEMNNFLNSFSHRVKHWTKGSRGAIQIYPQKGDVWALYTNWSSDWNELTPDKVVHKYDMVEVLEDYSEEKGVTVVPLVKVSGFKTVFQKHLDPSKIRRVPREEMFRFSHQVPSHLLTGLEGHNAPVGFLELDPAATPLELLLVGKNARNEESGEKEAAKDKKNPMKAGNKGVEKMIVYSRKRFKRRGKMMRVDSEISSLLIDE 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 111720 114993 - Conep16aG0001300.1 Cone16ag0013 454447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0013 731 SUPERFAMILY Chaperone J-domain 57 126 IPR036869 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 131 159 - -
Cone16ag0013 731 PRINTS DnaJ domain signature 122 141 IPR001623 -
Cone16ag0013 731 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cone16ag0013 731 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cone16ag0013 731 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 419 444 - -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 216 257 - -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 676 696 - -
Cone16ag0013 731 Pfam DnaJ domain 66 127 IPR001623 -
Cone16ag0013 731 PANTHER BNAC03G44070D PROTEIN 1 664 - -
Cone16ag0013 731 Gene3D DnaJ domain 63 165 IPR036869 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 214 292 - -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 125 165 - -
Cone16ag0013 731 CDD DnaJ 66 119 IPR001623 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 674 699 - -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 304 361 - -
Cone16ag0013 731 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 265 285 - -
Cone16ag0013 731 Pfam Domain of unknown function (DUF3444) 441 646 IPR024593 -
Cone16ag0013 731 MobiDBLite consensus disorder prediction 321 361 - -
Cone16ag0013 731 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Cone16ag0013 731 SMART dnaj_3 65 122 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0013 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1321 Cone-Chr12:9969479 Cone16ag0013 Cone-Chr16:111720 1.52E-141 dispersed
Cone14ag0744 Cone-Chr14:4157578 Cone16ag0013 Cone-Chr16:111720 4.26E-16 dispersed
Cone14ag0833 Cone-Chr14:5134128 Cone16ag0013 Cone-Chr16:111720 2.16E-60 dispersed
Cone16ag0013 Cone-Chr16:111720 Cone19ag0563 Cone-Chr19:4687524 5.57E-192 dispersed
Cone16ag0013 Cone-Chr16:111720 Cone13ag0600 Cone-Chr13:6177154 9.67E-201 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g87 . . . . . . . Bma12g01084 . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0013 . . . . . . . Blo15g00093 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011824 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 0 30