Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0017 ATGCCCCCAGAATTGTCCTCTACACCTCTGTCTTCTCATCCTCTCACTCATTCATCGGAACCAACAAGACCTTTAAGCTACAAACCCAACAAAGGAAATGAAAGCATGAGTTCTACCAGAAAGAAAATCATTCCTGTTCTTGTTCTGATCCTCTCTATTCTCTCAGTTCTACGACTTCTCCGAATTTCAATTACTACTACTTCTTCTTCTCCTTCTTCTTTTTCATCTTCTTCTTCACTGCCTGCACTGCCCCCTACTCTTCGACACACATGTTCTTCTCCTCTATGTAATGAGCTTCCTCATTCCTCGAATCAAAACAGAACCACTTCCATTCCCACCAATATATCACAAAAGGAATTCAAGCTTCTTTTGAATCTAATTACCAATAAAACCCCCTGCAATCTCCTTATCTTTGGCTTTGAACCACAATACCTTACCCTCTCAGCAATCAATGCAGGAGGGACAAACATTTTTCTAGTAGATGACACTCACAAGCTAAGCACAATCAAAATAAACACCAAAACAACTAGAATCTACAAGGTCGACGATTTCTACAAATTTCAGGCAAAAAGGGCTTACAAGATGCTCAAGAATGCAAGAAGAAACCCAGCATGTCAACCCGGAAGCTCAAAACTGCTTCGCCTGTCAAAATGCCAACTGGCATTGACAAATTTACCTCAACAAGTTTATGAGCTTAAGTGGGATGTGGTGATAGTGGATGGGCCAAGAGGAGATACACCAGAGGCACCAGGCAGAATGGGAGTAATCTACAGTGCTGGAGTAATAGCAAGAGCAGGGAATACTACAACTGATGTGGTTGTACATGATGTTGATCGTACGATCGAAAAGTGGTTTTCCTATGAGTTTCTGTGTGATGAGAACTTGGTTTCTTCAAAAGGAAAATTGTGGGTTTTCAAGATCAGAAAACGGTTCAACTCTAAAAGGTTTTGCCCGGCTGCACAAGGAGGAGGGGATGGTCATCAACCTCTTTCTCAGATTGCTATTGAAAAGACTGTTCTTGCACTTGATCCTAACGCTTTTATCCAAGCCCATGCAACCACGCTTGACATGAAGGTTGTAAGTCCTCAGACGTTCATAGTAAACCTTACGAACCCTCATCCTTCCGGCGACGATTGGGTCGGAGTTTTCTCTCCTGCAAACTTCAGTTCATCTATCTGCCCATCAACTGATTACAAAGACCAGAGTCCTTATCTCTGCACGGCCCCTATCAAGTACAAGTATGCCAATTATATGAATGGAGATTATACAAAGACAGGCAAAACTTCTTTGAGGTTTGATTTGATCAACCAACGTGCCGACTTTGCATTTGCATTATTCTCAGGAGGGTTGTCTAATCCAAAATTAGTTTCAGTTTCCAATGCTGTAGTTTTTCCAAACCCAAAGGAACCCCTTTATCCACGTCTAGCTCAGGGGAAGTCTTGGAATGAAATGACAGTGACCTGGACAAGTGGTTATAATATTGATGAAGCCGTACCACTTGTCGAGTGGGGCCTCCATGGAGAAACTCTAGTCCGGTCACCTGCCGGAACATTGACTTTTCAAAGAAATAGTGTATGCGGTGCACCAGCTCAGACTGTTGGTTGGCGTGATCCGGGTTTTATACACACCGGCTTCTTAAGAGACTTATGGCCTAATTCAGCGTACACATACAGGCTTGGTCATAGATTGAAAGACGGCTCGTACATCTGGAGCAAACAATATCAGTTCAAGTCGTCTCCATATCCGGGTCAGGACTCGTTACAGCGCATAATGATATTTGGTGACATGGGAAAGGGAGAGCGTGATGGTTCGAATGAGTACAGTAATTATCAGCCGGGTGCTCTCCAAACAATGGATCAACTCATCAAGGACTTAGATAACTACGACATTGTTTTTCACATCGGAGATATCTCTTATGCAAACGGATACCTCTCAGAATGGGATCAGTTCACGGCACAAGTTGAACCCGTCGCCTCTACTAAGGCATATATGATTGCAAGTGGAAATCACGAACGCGACACGCCCCGGACAGGATCTTTCTTCAACCACAATGATGCGGGTGGTGAATGTGGAGTGCCAGCTCAAACCATGTTTTATGTACCGGCTGAAAACCGAGCCAAATTCTGGTACTCTACGGATTATGGGATGTTCAGGTTCTGCATAGCGGACAGTGAACACGACTGGAGAGAAGGTACAGAACAATACAAATTCATCGAACAATGCTTTGCATCTGTAGACAGACAGAAGCAGCCATGGCTAATCTTTGTGGCACATCGTGTCCTCGGCTACTCCTCTAACGATTGGTATGCCCAGGAGGGTACTTCTGAGGAGCCCATGGGAAGAGATGATCTGCAGAAGCTCTGGCAGAAGTACAAGGTCGACATTGCATTTTATGGCCACGTCCATAACTATGAAAGGTCATGTCCCATTTACCAGAACCAATGTATGAACAATGAGAAATCGCATTATTCCGGCACGGTGAGTGGGACCATTCACATCGTGGTAGGTGGGGGCGGGGCCCACCTATCGAACTTCAGCCCACAACATCCTCGTTGGAGTATCTACAGAGATTTCGACTGGGGACTTGGGAAATTGACCGCTTTTAACCATTCTTCGCTTCTGTTCGAGTACAAGAAGAGCCGGGATGGGAAAGTTTATGATTCGTTTACCATATCAAGGAATTATCAGGATGTGTTAGCTTGTGTTCATGATAGCTGTGAAGCAACCACCTTGGCTGCTTGA 2742 44.42 MPPELSSTPLSSHPLTHSSEPTRPLSYKPNKGNESMSSTRKKIIPVLVLILSILSVLRLLRISITTTSSSPSSFSSSSSLPALPPTLRHTCSSPLCNELPHSSNQNRTTSIPTNISQKEFKLLLNLITNKTPCNLLIFGFEPQYLTLSAINAGGTNIFLVDDTHKLSTIKINTKTTRIYKVDDFYKFQAKRAYKMLKNARRNPACQPGSSKLLRLSKCQLALTNLPQQVYELKWDVVIVDGPRGDTPEAPGRMGVIYSAGVIARAGNTTTDVVVHDVDRTIEKWFSYEFLCDENLVSSKGKLWVFKIRKRFNSKRFCPAAQGGGDGHQPLSQIAIEKTVLALDPNAFIQAHATTLDMKVVSPQTFIVNLTNPHPSGDDWVGVFSPANFSSSICPSTDYKDQSPYLCTAPIKYKYANYMNGDYTKTGKTSLRFDLINQRADFAFALFSGGLSNPKLVSVSNAVVFPNPKEPLYPRLAQGKSWNEMTVTWTSGYNIDEAVPLVEWGLHGETLVRSPAGTLTFQRNSVCGAPAQTVGWRDPGFIHTGFLRDLWPNSAYTYRLGHRLKDGSYIWSKQYQFKSSPYPGQDSLQRIMIFGDMGKGERDGSNEYSNYQPGALQTMDQLIKDLDNYDIVFHIGDISYANGYLSEWDQFTAQVEPVASTKAYMIASGNHERDTPRTGSFFNHNDAGGECGVPAQTMFYVPAENRAKFWYSTDYGMFRFCIADSEHDWREGTEQYKFIEQCFASVDRQKQPWLIFVAHRVLGYSSNDWYAQEGTSEEPMGRDDLQKLWQKYKVDIAFYGHVHNYERSCPIYQNQCMNNEKSHYSGTVSGTIHIVVGGGGAHLSNFSPQHPRWSIYRDFDWGLGKLTAFNHSSLLFEYKKSRDGKVYDSFTISRNYQDVLACVHDSCEATTLAA 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 127397 133446 + Conep16aG0001700.1 Cone16ag0017 454451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0017 913 MobiDBLite consensus disorder prediction 1 36 - -
Cone16ag0017 913 SUPERFAMILY Metallo-dependent phosphatases 589 904 IPR029052 -
Cone16ag0017 913 Pfam IRX15/IRX15L/GXM 119 305 IPR006514 GO:0045492(InterPro)
Cone16ag0017 913 Pfam Iron/zinc purple acid phosphatase-like protein C 829 888 IPR025733 -
Cone16ag0017 913 SUPERFAMILY Purple acid phosphatase, N-terminal domain 447 580 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone16ag0017 913 PANTHER PURPLE ACID PHOSPHATASE-RELATED 322 896 - -
Cone16ag0017 913 MobiDBLite consensus disorder prediction 8 36 - -
Cone16ag0017 913 Pfam Calcineurin-like phosphoesterase 589 804 IPR004843 GO:0016787(InterPro)
Cone16ag0017 913 NCBIfam TIGR01627 domain 101 317 IPR006514 GO:0045492(InterPro)
Cone16ag0017 913 Gene3D - 583 901 IPR029052 -
Cone16ag0017 913 Pfam Purple acid Phosphatase, N-terminal domain 473 577 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Cone16ag0017 913 Pfam Fn3-like domain from Purple Acid Phosphatase 349 466 IPR040974 -
Cone16ag0017 913 CDD MPP_PAPs 588 893 IPR041792 -
Cone16ag0017 913 Gene3D - 470 582 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0017 K22390 - - cit:102612664 961.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0017 Cone-Chr16:127397 Cone9ag0538 Cone-Chr9:2573539 9.90e-318 dispersed
Cone16ag0017 Cone-Chr16:127397 Cone16ag0018 Cone-Chr16:136609 0 tandem
Cone13ag0213 Cone-Chr13:1383615 Cone16ag0017 Cone-Chr16:127397 0 transposed
Cone16ag0017 Cone-Chr16:127397 Cone2ag0979 Cone-Chr2:35260575 1.24E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g110 . . . . . . . . . . . . . . . . . Bhi02g00517 . . . . . . . . . . . . . . Cone16ag0017 . . . . . . . . . . . Bpe15g00217 . Bma08g00130 . Cmo10g00057 . . . . . . Cpe18g00903 . . . . . . . . . . . . . . . . . Cme02g02064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054607 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1