Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0021 | ATGGCGATCACATTCTACGACGTCAACTCTACATCTGGCCTTAAGAAGCTCGACGCCCACCTTCTCACTTGCAGTTACATCACCGGATACCAAGCTTCGAAGGATGATATTACTGTTCACGCGGCTCTATCGAAGCCTCCACCTACTGAATTCGTCAACGTGTCTCGTTGGTACAATCACATCGAAGCACTTCTGAGAATTTCGGGTGTTTCTGGAGAAGGATCCGGTGTTGTTGTGGTGGGATCTGCTCCCATCACTGAGGAGGCAATTGCAACTCCTCCAGCTGGTGATTCAAAGGCTGCAGCAGCGGATGATGATGATGATGACGATGTTGATCTGTTTGGTGAGGAAACCGAGGAGGAGAAGAAGGCTTCCGAGGAGAGAGCAGCTACCATCAAGGCATCTTCTAAGAAGAAAGAGTCTGGGAAATCATCTGTTCTCTTAGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAACTCGAAGAAGCAGTAAGAAGTGTTGAGATGGAAGGGTTGTTTTGGGGAGCATCCAAACTCGTAGCTGTTGGGTACGGTATTAAGAAATTGCAGATAATGCTTACTATTGTGGATGACTTGGTGTCTGTTGACACTCTCATTGAGGAGAAACTCACTGTTGAGCCAATTAATGAGTATGTCCAGAGTTGTGACATTGTCGCCTTCAACAAAATCTAA | 699 | 46.21 | MAITFYDVNSTSGLKKLDAHLLTCSYITGYQASKDDITVHAALSKPPPTEFVNVSRWYNHIEALLRISGVSGEGSGVVVVGSAPITEEAIATPPAGDSKAAAADDDDDDDVDLFGEETEEEKKASEERAATIKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMEGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEEKLTVEPINEYVQSCDIVAFNKI | 232 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 150691 | 152433 | - | Conep16aG0002100.1 | Cone16ag0021 | 454455 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0021 | 232 | Pfam | EF-1 guanine nucleotide exchange domain | 145 | 232 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cone16ag0021 | 232 | SMART | EF1_GNE_2 | 143 | 232 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cone16ag0021 | 232 | CDD | EF1B | 146 | 232 | IPR014038 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cone16ag0021 | 232 | Gene3D | - | 3 | 75 | - | - | |
Cone16ag0021 | 232 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 1. | 107 | 115 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cone16ag0021 | 232 | FunFam | Elongation factor 1-delta 1 | 3 | 78 | - | - | |
Cone16ag0021 | 232 | FunFam | Elongation factor 1-beta 1 like | 137 | 232 | - | - | |
Cone16ag0021 | 232 | Gene3D | - | 136 | 232 | IPR014717 | - | |
Cone16ag0021 | 232 | ProSitePatterns | Elongation factor 1 beta/beta'/delta chain signature 2. | 221 | 232 | IPR001326 | GO:0003746(InterPro)|GO:0006414(InterPro) | |
Cone16ag0021 | 232 | MobiDBLite | consensus disorder prediction | 89 | 110 | - | - | |
Cone16ag0021 | 232 | PANTHER | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER | 1 | 232 | IPR049720 | GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER) | |
Cone16ag0021 | 232 | SUPERFAMILY | eEF-1beta-like | 140 | 232 | IPR036219 | - | |
Cone16ag0021 | 232 | SUPERFAMILY | GST C-terminal domain-like | 9 | 68 | IPR036282 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone11ag1561 | Cone-Chr11:10857070 | Cone16ag0021 | Cone-Chr16:150691 | 2.55E-66 | dispersed | |
Cone16ag0021 | Cone-Chr16:150691 | Cone18ag0035 | Cone-Chr18:215631 | 8.44E-65 | dispersed | |
Cone16ag0021 | Cone-Chr16:150691 | Cone16ag0023 | Cone-Chr16:154312 | 2.71E-57 | proximal | |
Cone16ag0021 | Cone-Chr16:150691 | Cone2ag0969 | Cone-Chr2:35222828 | 1.24E-57 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0021 | K03232 | - | mdm:103420440 | 349.362 |