Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0021 ATGGCGATCACATTCTACGACGTCAACTCTACATCTGGCCTTAAGAAGCTCGACGCCCACCTTCTCACTTGCAGTTACATCACCGGATACCAAGCTTCGAAGGATGATATTACTGTTCACGCGGCTCTATCGAAGCCTCCACCTACTGAATTCGTCAACGTGTCTCGTTGGTACAATCACATCGAAGCACTTCTGAGAATTTCGGGTGTTTCTGGAGAAGGATCCGGTGTTGTTGTGGTGGGATCTGCTCCCATCACTGAGGAGGCAATTGCAACTCCTCCAGCTGGTGATTCAAAGGCTGCAGCAGCGGATGATGATGATGATGACGATGTTGATCTGTTTGGTGAGGAAACCGAGGAGGAGAAGAAGGCTTCCGAGGAGAGAGCAGCTACCATCAAGGCATCTTCTAAGAAGAAAGAGTCTGGGAAATCATCTGTTCTCTTAGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAACTCGAAGAAGCAGTAAGAAGTGTTGAGATGGAAGGGTTGTTTTGGGGAGCATCCAAACTCGTAGCTGTTGGGTACGGTATTAAGAAATTGCAGATAATGCTTACTATTGTGGATGACTTGGTGTCTGTTGACACTCTCATTGAGGAGAAACTCACTGTTGAGCCAATTAATGAGTATGTCCAGAGTTGTGACATTGTCGCCTTCAACAAAATCTAA 699 46.21 MAITFYDVNSTSGLKKLDAHLLTCSYITGYQASKDDITVHAALSKPPPTEFVNVSRWYNHIEALLRISGVSGEGSGVVVVGSAPITEEAIATPPAGDSKAAAADDDDDDDVDLFGEETEEEKKASEERAATIKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMEGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEEKLTVEPINEYVQSCDIVAFNKI 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 150691 152433 - Conep16aG0002100.1 Cone16ag0021 454455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0021 232 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone16ag0021 232 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone16ag0021 232 CDD EF1B 146 232 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone16ag0021 232 Gene3D - 3 75 - -
Cone16ag0021 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 107 115 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone16ag0021 232 FunFam Elongation factor 1-delta 1 3 78 - -
Cone16ag0021 232 FunFam Elongation factor 1-beta 1 like 137 232 - -
Cone16ag0021 232 Gene3D - 136 232 IPR014717 -
Cone16ag0021 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone16ag0021 232 MobiDBLite consensus disorder prediction 89 110 - -
Cone16ag0021 232 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 232 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Cone16ag0021 232 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
Cone16ag0021 232 SUPERFAMILY GST C-terminal domain-like 9 68 IPR036282 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1561 Cone-Chr11:10857070 Cone16ag0021 Cone-Chr16:150691 2.55E-66 dispersed
Cone16ag0021 Cone-Chr16:150691 Cone18ag0035 Cone-Chr18:215631 8.44E-65 dispersed
Cone16ag0021 Cone-Chr16:150691 Cone16ag0023 Cone-Chr16:154312 2.71E-57 proximal
Cone16ag0021 Cone-Chr16:150691 Cone2ag0969 Cone-Chr2:35222828 1.24E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0021 K03232 - mdm:103420440 349.362