Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0022 ATGACGATAGAAGGAGAGATCAAGCGAGTTTTCTGCTACTTTGACGAGGATGGAGACGGCAAAATCTCGGCCTCGGAGTTGGTGCGGAGGCTGAATGCAATAGGGGGTGATGGATTATTACAAGCAGAGGCTGAAATGCTGGTGCAAGTGTTGGACTCCGACGGAGATGGGTTTCTGGGTTTAGAGGATGTGATTGGATTGCTGGAACATGGAGGGGAGGAAGAGAAAATGAAGGATCTTAAAGTTGCTTTTGAGTTGTATGATGTAGAGGGATGTGGGTTTATTACACCCAAGAGCTTGAAGAGAATGCTGAGCAAATTGGGTGAGAAGAAATCTGTTGAGGACTGCAGACTTATGATTAAAAGGTTTGATCTTGATGGCGATGGTGTTATTAACTTCCATGAATTCCAAGTTATGACGGAGCGAGAGGACCAAAAATCTCCCTAA 447 44.97 MTIEGEIKRVFCYFDEDGDGKISASELVRRLNAIGGDGLLQAEAEMLVQVLDSDGDGFLGLEDVIGLLEHGGEEEKMKDLKVAFELYDVEGCGFITPKSLKRMLSKLGEKKSVEDCRLMIKRFDLDGDGVINFHEFQVMTEREDQKSP 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 152840 153659 - Conep16aG0002200.1 Cone16ag0022 454456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0022 148 Gene3D - 69 147 - -
Cone16ag0022 148 SUPERFAMILY EF-hand 6 140 IPR011992 -
Cone16ag0022 148 ProSiteProfiles EF-hand calcium-binding domain profile. 111 146 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 SMART efh_1 6 34 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 SMART efh_1 43 71 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 SMART efh_1 79 107 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 SMART efh_1 115 143 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 FunFam Calmodulin 1 2 142 - -
Cone16ag0022 148 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Cone16ag0022 148 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Cone16ag0022 148 Pfam EF-hand domain pair 78 137 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 CDD EFh 79 139 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 CDD EFh 6 68 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509(InterPro)
Cone16ag0022 148 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Cone16ag0022 148 Gene3D - 1 68 - -
Cone16ag0022 148 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 142 - GO:0005509(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0022 K13448 - - mdm:103437550 190.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0022 Cone-Chr16:152840 Cone2ag0967 Cone-Chr2:35212098 8.22E-43 dispersed
Cone16ag0022 Cone-Chr16:152840 Cone16ag0025 Cone-Chr16:170734 4.73E-55 proximal
Cone16ag0022 Cone-Chr16:152840 Cone16ag0983 Cone-Chr16:9726933 8.54E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g134 . . Bda06g00735 . Bpe12g00494 . . Bma12g01078 . . Cma10g00335 Cma11g00041 Car10g00318 Car11g00037 Sed08g1476 . Cpe04g01609 Bhi02g00531 Tan09g2361 Cmetu09g1801 . Hepe09g0057 . . Cla06g01734 Cam06g1925 Cec06g1975 Cco06g1979 Clacu06g1881 Cmu06g1823 Cre06g2638 Cone2ag0967 Cone16ag0022 . . . . . . . Blo15g00213 . . . . . . . Cmo10g00363 Cmo11g00042 . . . . . . . . . . . . . . . . . . . . Lsi06g01634 Csa01g00065 . Cme02g02057