Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0032 ATGGCGGATTCAATAGATCCACAGAGCGGTTTCTGCTCCAAAACGAAGTCGTTTCACAGCCTTCGACCTCAAACGCCGCTCCCGCCACTCTCTCAACCTCTCTCTCTAGCCGACTACGCTCTCTCTCTCCTCCGATCCTCTCCTCCCGCTACCAACACCACCGCCCTCATCGACGCCTCCACCGACCGCCATGTGTCCTACCCTCTCCTCCTCCGCCAAATCGAAACGCTCACTTTAAACCTCAAATCCCTAGCTTCTCTTTCAAGCGGCGACGTGGCATTCGTGCTCTCGCCTTCTTCCCTCCAAATTCCTGTTCTCTACTTCTCTCTGTTATATCTCGGCGTAGTCATCTCTCCAGCTAATCCACTCAGCTCTGACTTGGAGATAGCTCACCAGGTCGGACTCAGTCAACCGGTCATCGCTTTCGCTACCTCCTCTACTGCTCACAAGCTTCCTGAGCTCAAACTCGGTACGATCCTGCTCGACTCGCCGTATTTCCTCTCCATGATTAATGAAATCCGAGAAACAGATAGAAACGATCGCGTTTCCAACCGATTCGAGGTGAGTCAGTCCGATACAGCAGCAATTCTTTTTTCCTCAGGAACTACAGGACTAGTCAAGGCCGTTCAATTGACTCACCGGAATTTCATCGCCTTGACAGCAGGATTCTACCATCTCCGGCTGGTCGCAGATGCAAATCTGACTCAGCCACCCACCGTTTCTCTCTTCACCTTGCCATTATTCCACGTGTTTGGATTCTTCATGCTGATTCGATCAATCTCCATGGGAGAAACACTTGTTCTGATGCAGAGATTTGATTTTGAACAAATGTTGAGGATCGTGGAGAAGTATCGGATCACGATGATGCCAGTATCTCCTCCGCTCGTGGTGGCTCTGGCCAAGTCGGAGCTAACAGAAAAATACGACCTCACTTCACTTCAAATTCTAGGATGTGGCGGAGCTCCGCTCGGAAAGGAGGTGGTGGAGAAATTCAACGAGAGGTTTCCGGACGTGGAGATTACTCAGGGATATGGTTTGACTGAAACAGGAGGAGCAGCGACAAGAACAGTTGGGCCTGATGAGTCCAAACGGATCAGTTCCGTGGGCCGGCTGGCTGAAAACATGGAGGCTAAGATAGTGGATCCAGCTACTGGACTGAGCTTACCTCCAGGCCAGAAAGGAGAGCTTTGGCTAAGAGGTCCAATTGTCATGAAAGGTTATGTTAGCAATGAAAAAGCGAATGCAGAAACCTTTGATCCAGAAGGATGGCTTAAAACTGGTGATCTCTGTTATTTTGATTCTGAGGGGTTCCTTTACATAGTTGACAGGTTGAAGGAATTAATCAAGTACAAAGGATATCAGGTACCACCTGCAGAGTTGGAACATATACTTCAATCGAATCCGGAAATTGCAGATGCAGCTGTGATTCCGTACCCTGATGAAGAAACAGGGGAGATTCCTATGGCCTATGTTGTTAGAAAGCCTGGAAGCAGTATTAATGAAGCTCAAGTTATAGATTTTATTACAAAACAGGTAGCTCCATACAAGAAAGTACGGAGAGTAGCTTTTGTGAACTCCATTCCCAAATCTCCAGCTGGGAAGATATTGAGGAGGGAGCTCGTTAAGCATGCTCTCTCTTCTAATGGTTCACCTAAATTGTAA 1662 48.19 MADSIDPQSGFCSKTKSFHSLRPQTPLPPLSQPLSLADYALSLLRSSPPATNTTALIDASTDRHVSYPLLLRQIETLTLNLKSLASLSSGDVAFVLSPSSLQIPVLYFSLLYLGVVISPANPLSSDLEIAHQVGLSQPVIAFATSSTAHKLPELKLGTILLDSPYFLSMINEIRETDRNDRVSNRFEVSQSDTAAILFSSGTTGLVKAVQLTHRNFIALTAGFYHLRLVADANLTQPPTVSLFTLPLFHVFGFFMLIRSISMGETLVLMQRFDFEQMLRIVEKYRITMMPVSPPLVVALAKSELTEKYDLTSLQILGCGGAPLGKEVVEKFNERFPDVEITQGYGLTETGGAATRTVGPDESKRISSVGRLAENMEAKIVDPATGLSLPPGQKGELWLRGPIVMKGYVSNEKANAETFDPEGWLKTGDLCYFDSEGFLYIVDRLKELIKYKGYQVPPAELEHILQSNPEIADAAVIPYPDEETGEIPMAYVVRKPGSSINEAQVIDFITKQVAPYKKVRRVAFVNSIPKSPAGKILRRELVKHALSSNGSPKL 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 199550 201966 + Conep16aG0003200.1 Cone16ag0032 454466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0032 553 SUPERFAMILY Acetyl-CoA synthetase-like 51 546 - -
Cone16ag0032 553 CDD 4CL 28 540 - -
Cone16ag0032 553 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 540 - GO:0016405(PANTHER)
Cone16ag0032 553 Pfam AMP-binding enzyme 52 407 IPR000873 -
Cone16ag0032 553 Gene3D - 446 546 IPR045851 -
Cone16ag0032 553 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Cone16ag0032 553 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Cone16ag0032 553 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
Cone16ag0032 553 Gene3D - 22 445 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0032 Cone-Chr16:199550 Cone4ag2006 Cone-Chr4:13992231 1.93E-155 dispersed
Cone12ag0705 Cone-Chr12:6485683 Cone16ag0032 Cone-Chr16:199550 1.26E-98 wgd
Cone16ag0032 Cone-Chr16:199550 Cone16ag0978 Cone-Chr16:9705980 1.72E-186 wgd
Cone16ag0032 Cone-Chr16:199550 Cone8ag0733 Cone-Chr8:7361201 4.87E-199 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0032 K01904 - gmx:100777435 764.222