Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0038 ATGCCTAATGCTTATAGCTTCTTGTTTAATGATGACTTCCATAATAATAGTAGTACTCATGAATTGAATGGCAATGATGCTATGCCGATTTATCCTCATCATCTTTACCTTGAAATCCGGGATCCGAAAAGGCTCAAGCCGACACCAAGTACTCCGGATTCGATCTTGTCTAATACAACCTTTCATAGCACTAGTAGCTTCAATATTATCCCGCGGTTTCATTTGCGTGACCATATTTTGGCATATACGCAAAGGTATTATGCTTTTGAGGCCATTGAAGAAGTTGAAGAAGGCATTTTTAATGGTCATGAAGATCAAGAGAGTGAGAAGAATGCAGTTAGTCGTGAAGAAGATGGAAGTTCTGACGGGATGAGACTTGTTCAACTTCTTGTTGCTTGTGCCGAAGCCGTCGCTTGTCGTGACAAGTCCTATGCTTCGATTCTACTGTCCGAGCTAAGGCTCCATGCTTTAGTCTTTGGCTCTTCTTTTCAACGGGTGGCATCTTGTTTTGTTCAAGGCCTAGCCGACCGGCTCGCTAGGGTTCAACCCTTTGGAACAGTTGGTCTGATTGCCCCGATGATGAATTTGATGGATTTCGCCTCAGAGAGGACTGAAGAAGCCTTCTGCCTTGTCTACGAGATCTGCCCCCATATTCAATTCGGTCATTTCGTTGCCAATTCATCAATATTGGAAGCCTTTGAGGGAGAGAAGTTTGTCCATGTTGTGGACCTAGGAATGACCCTAGGTTTGCCACATGGTCACCAATGGCGGAGACTGATCGATCATCTAGTTAGCCACTCGGATCAACTGCCTAACCGCCTTCGAATAACCGCCGTTGGCCTTTCGATTGATAGGTTCCAAACAATTGGAGAGGGCCTGATAACTTATGCAAAAAGCTTCGGAATCAACCTTGAATTCTCAATTGTGGAAAGCAACTTGGAAAACTTGGAACCTCGAGACATCAAAGTCTACGAGAATGAAGTCCTTGTGGTCAATAGCATTCTTCAATTGCATTGTGTGGTCAAGGAGAGTAGAGGAGCACTAAATTCAGTATTGAAAATGATCCATGAACTCTCTCCAAAGATATTAGTCATAGTGGAGCAAGACTCCAGCCATAATGGACCATTTTTCCTTGGCAGATTCATGGAAGCTTTACATTACTACTCTGCGATTTTCGACTCACTAGATGTGATGCTGCCTAAATACGACACTAGGCGTGCCAAAATCGAACAATTTTACTTGGCGGAGGAAATAAAGAACATCGTCAGCTGTGAGGGGCCTGCACGGGTGGAACGACACGAAAGGATGGACCAGTGGCGCAGGAGGATGAGCCGAGCAGGGTTTCAGGTCGAACCCATTAAGCTAATCAGTCAAGCCAAAGAATGGCTTGGAGAAAATAAGGTCAATGAGGGGTACACTATTGTGGAAGAGAAGGGTCGTTTGGTGCTTGGTTGGAAATCTAAGCCAATTGTTGCTGCTTCTTGCTGGAAATGCTAA 1497 44.56 MPNAYSFLFNDDFHNNSSTHELNGNDAMPIYPHHLYLEIRDPKRLKPTPSTPDSILSNTTFHSTSSFNIIPRFHLRDHILAYTQRYYAFEAIEEVEEGIFNGHEDQESEKNAVSREEDGSSDGMRLVQLLVACAEAVACRDKSYASILLSELRLHALVFGSSFQRVASCFVQGLADRLARVQPFGTVGLIAPMMNLMDFASERTEEAFCLVYEICPHIQFGHFVANSSILEAFEGEKFVHVVDLGMTLGLPHGHQWRRLIDHLVSHSDQLPNRLRITAVGLSIDRFQTIGEGLITYAKSFGINLEFSIVESNLENLEPRDIKVYENEVLVVNSILQLHCVVKESRGALNSVLKMIHELSPKILVIVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDVMLPKYDTRRAKIEQFYLAEEIKNIVSCEGPARVERHERMDQWRRRMSRAGFQVEPIKLISQAKEWLGENKVNEGYTIVEEKGRLVLGWKSKPIVAASCWKC 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 223671 225167 + Conep16aG0003800.1 Cone16ag0038 454472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0038 498 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 110 496 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone16ag0038 498 Pfam GRAS domain family 126 497 IPR005202 -
Cone16ag0038 498 ProSiteProfiles GRAS family profile. 117 497 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0038 K27752 - - cit:127900932 677.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0038 Cone-Chr16:223671 Cone16ag1013 Cone-Chr16:9837920 3.69E-86 dispersed
Cone3ag1499 Cone-Chr3:33579407 Cone16ag0038 Cone-Chr16:223671 1.49E-90 transposed
Cone13ag1112 Cone-Chr13:8925699 Cone16ag0038 Cone-Chr16:223671 2.99E-09 wgd
Cone16ag0038 Cone-Chr16:223671 Cone19ag1100 Cone-Chr19:7960214 1.82E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g917 . Blo16g00254 . . . Bpe13g00212 Bma06g00247 . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0038 . . . . . . . . Bda11g01611 . . Bpe15g00201 Bma03g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006339 3 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44915 PF00406 ADK 7.70E-60 CL0023 Cone TF