Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0045 ATGAAAACAGCCATGTTCATCACCTCGTCGCTTCTTCTCTTCCTTTCTCTTTCGGTTCATGAATTTGTCGCAGCTTATTCTACATCAAATCCTTCAGAGAAAAGCAAGGATGTACATCAAGTAAATTTTTTCCAAGAAAGAAGTAGGACGGCCTGGCAAAGTATGAAGGAGGTATGGACAAAACTTTCTGGGAAAATCAATTTTAGAACTGTTAAGCAGGAATCTGAGCTTGTACTCAAGAGGGTAGACCGTAGCTACAGAGAAAGAAGTAGGACAGCCTGGGAAAATATCAAGGAGGCCTGGAAAAATCGTTCCGGGGATATTAATATCAGAATACCTAAGCAGGAACCGGAGCTTGTACATGAAGTACATTGTTCCCGAGAAAGAAGTCGGACGGCCTGGAATATTATCGAGGAGTATTTAATGCCATTTATGGAGAAGGAAAAGTATCAGCTTTCAAGCAAGTGTAGGCTTCATCCTGACAATGATATGTTTAGAGATCATGAGCAACACAAGATTCATACTGATGTAAACGAGTGGCAATGTGGATATTGTAAGAAAAGTTTCCATGCCGAGAAATTTCTTGATCAGCATCTTGACAGTCGACACTCCGACCTTCTTAATGCTAGCCAGAGCAGCTGCTTAGCCGATCTATGTGGGGCATTGCAATGTGACCTTGTAATGAATACCAAGTCACCAAAATCCAAGTGCAATCTAGCAACAACTGCAAGGAACCGGCACCTTTGTGAGAGTCTTGCATATAGCTGTTTCCCCATCCATAAAGGTCTCTCAGCTTGCCGTCTTAATGAAATGTTCTTACAACAGTTTTGTGATGCTCTCTCTTGCTCGGCAAAACAAAAGCCATTTTCTAGTGGAGGCAAGAAGCAAACAAGTGTCTTTTACCCATCAATTGTGATTCTAACAATGATGCCTGCTTCCTCTTTTCTATATCCTCGTTAA 960 41.56 MKTAMFITSSLLLFLSLSVHEFVAAYSTSNPSEKSKDVHQVNFFQERSRTAWQSMKEVWTKLSGKINFRTVKQESELVLKRVDRSYRERSRTAWENIKEAWKNRSGDINIRIPKQEPELVHEVHCSRERSRTAWNIIEEYLMPFMEKEKYQLSSKCRLHPDNDMFRDHEQHKIHTDVNEWQCGYCKKSFHAEKFLDQHLDSRHSDLLNASQSSCLADLCGALQCDLVMNTKSPKSKCNLATTARNRHLCESLAYSCFPIHKGLSACRLNEMFLQQFCDALSCSAKQKPFSSGGKKQTSVFYPSIVILTMMPASSFLYPR 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 247764 251078 + Conep16aG0004500.1 Cone16ag0045 454479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0045 319 ProSitePatterns Zinc finger C2H2 type domain signature. 182 203 IPR013087 -
Cone16ag0045 319 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 204 IPR013087 -
Cone16ag0045 319 PANTHER ZINC FINGER PROTEIN-RELATED 115 314 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0045 Cone-Chr16:247764 Cone16ag0965 Cone-Chr16:9655090 8.99E-78 wgd
Cone16ag0045 Cone-Chr16:247764 Cone2ag0953 Cone-Chr2:35159780 2.71E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44916 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0045 - - - 0.0