Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0051 ATGGAACTCTCTGAAGCTGTTTCCGTCTCATTAGGGCTTCCACCTTCACCTTCTCGTGATTCCGATCGCGATCATGCAAGTTATGACCCCGATCACACTGCTGCTGAGGAAAACGCCCTTCATGCGGAGCTTGAGAAGTTGGATTTGAAAGAGGCAAATTGTAATGGAGGTGATGAAGAAAATGGTGGTAGTAAGAGCGAAGAAGAGAGAGGTGGAGAATCTGGAGATCATGAAAATGTGAACGTTAACGAGAACGAGAATGAGAATGAAGATGATGTTGCGAATGGGGATGAGAAAGTAAGTGGTGGTGATGATGAGGTAGAGAGTAAGGAGAGAGGCGAGAGGAGAGTAATAAGTTATCACTATCCAGTTCGTCCTGACGCTGAAGATTGTGTTTATTACCTTAAGACTGGGAATTGTAAATTTGGATCCAACTGCAAGTTCAATCACCCTTATAGGAAGAAAAACCAGGCTGTCAAGGAAAGGGTAGAGGACAAAGAAGATTCAGCAGCACTAGCAAGTAACACAGAATGCAAGTACTACTCAAGGACAGGCGGTTGCAAGTATGGAAACTCCTGTAGATACAACCACCCAAAAGAAAAATATCCTGTAACCACAACTCTGGACCTAAACTTTCTGGGCTTACCAATTCGACCAGGTGAGAGAGAGTGCCCTTATTACATGCGAACCAGCTCTTGCAAGTATGGAGCTAACTGCAGGTTTAATCACCCTGATCCTGTGACTGTTGGAGCATCATCTGACTCTACATTAGGATATGGTAATGGCAGATCATCTCTCTCCTCCTTACAAGGTGCACCTCAGCCTGCTATTACATCCTGGTCTTCACCAAGAACAGTGATTGAAACTGCACCATATCCTCCTGTCATGGCCTTGCAAGGGGTTCCTTCTCAAAACCCAGAATGGAATGGATTTCAGGCTCCTATATATCCATCTTCCGGATACGCAAGGAGTAAATCAGCAACAGGGATTGGTCTCTATAATGCATATCAGCAGCAGCAAGTGCAAGTAGAAGAATTTCCAGAAAGACCTGGTCAACCTGACTGCACTTTCTTCCTGAAAACAGGGCACTGTAAGTTCAAATCTGGTTGCAAATATCACCACCCGAAAAATCGGATTTCAAGGTCAACCACATGCACTCTTAGTGACAAGGGCCTCCCTCTGAGACCTGATCAGAATGTCTGCTCCCATTACAGCCGCTATGGAATCTGTAAGTTCGGGCCGGCTTGTAGATATGACCATCCAATAGACCTAATTCCTTCAAGTGGACTCGAAAATGTTGACACAGCAAGGGCAGAATCATCCAGGGTTGTAAGTGGAAACAATGTTTGCAATTCAGCAGTCCGTTTAATGATTTAG 1377 44.81 MELSEAVSVSLGLPPSPSRDSDRDHASYDPDHTAAEENALHAELEKLDLKEANCNGGDEENGGSKSEEERGGESGDHENVNVNENENENEDDVANGDEKVSGGDDEVESKERGERRVISYHYPVRPDAEDCVYYLKTGNCKFGSNCKFNHPYRKKNQAVKERVEDKEDSAALASNTECKYYSRTGGCKYGNSCRYNHPKEKYPVTTTLDLNFLGLPIRPGERECPYYMRTSSCKYGANCRFNHPDPVTVGASSDSTLGYGNGRSSLSSLQGAPQPAITSWSSPRTVIETAPYPPVMALQGVPSQNPEWNGFQAPIYPSSGYARSKSATGIGLYNAYQQQQVQVEEFPERPGQPDCTFFLKTGHCKFKSGCKYHHPKNRISRSTTCTLSDKGLPLRPDQNVCSHYSRYGICKFGPACRYDHPIDLIPSSGLENVDTARAESSRVVSGNNVCNSAVRLMI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 266827 269740 - Conep16aG0005100.1 Cone16ag0051 454485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0051 458 Gene3D - 168 255 - -
Cone16ag0051 458 SMART c3hfinal6 218 245 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SMART c3hfinal6 125 152 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SMART c3hfinal6 349 376 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SMART c3hfinal6 395 422 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SMART c3hfinal6 173 199 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SUPERFAMILY CCCH zinc finger 393 421 IPR036855 GO:0046872(InterPro)
Cone16ag0051 458 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 ProSiteProfiles Zinc finger C3H1-type profile. 172 200 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 397 421 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 177 199 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 151 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 376 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SUPERFAMILY CCCH zinc finger 175 202 IPR036855 GO:0046872(InterPro)
Cone16ag0051 458 Gene3D - 81 164 - -
Cone16ag0051 458 Gene3D - 337 423 - -
Cone16ag0051 458 ProSiteProfiles Zinc finger C3H1-type profile. 395 423 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 MobiDBLite consensus disorder prediction 18 84 - -
Cone16ag0051 458 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 ProSiteProfiles Zinc finger C3H1-type profile. 125 153 IPR000571 GO:0046872(InterPro)
Cone16ag0051 458 SUPERFAMILY CCCH zinc finger 124 154 IPR036855 GO:0046872(InterPro)
Cone16ag0051 458 SUPERFAMILY CCCH zinc finger 221 245 IPR036855 GO:0046872(InterPro)
Cone16ag0051 458 MobiDBLite consensus disorder prediction 1 114 - -
Cone16ag0051 458 PANTHER PROTEIN PHOSPHATASE RELATED 56 422 IPR050974 GO:0003729(PANTHER)
Cone16ag0051 458 MobiDBLite consensus disorder prediction 94 114 - -
Cone16ag0051 458 SUPERFAMILY CCCH zinc finger 354 378 IPR036855 GO:0046872(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0051 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0051 Cone-Chr16:266827 Cone5ag0933 Cone-Chr5:3992290 1.33E-26 dispersed
Cone13ag0208 Cone-Chr13:1335271 Cone16ag0051 Cone-Chr16:266827 2.28E-53 transposed
Cone16ag0051 Cone-Chr16:266827 Cone2ag0950 Cone-Chr2:35149649 3.25E-214 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g893 Blo04g00708 Blo16g00248 . . . Bpe13g00218 Bma06g00242 . Cmo13g00808 Cmo18g00184 . . . . . Cpe20g00333 . . . . . . . . . . . . . . . Cone2ag0950 Cone16ag0051 . . Lsi02g00466 Csa01g00921 Chy12g01205 Cme12g01626 . . Bda11g01626 Bda14g00777 . Bpe15g00167 Bma03g00756 . Sed08g2465 . . Cma13g00777 Cma18g00208 Car13g00625 Car18g00202 Cpe09g00988 . Bhi08g01694 Tan05g2898 Cmetu12g0034 Lac10g0537 Hepe07g2163 . . Cla03g00322 Cam03g0338 Cec03g0330 Cco03g0344 Clacu03g0340 Cmu03g0946 Cre03g0639 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004285 3 1 3 2 2 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 1 1 1 1 2 1 2 1 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44918 PF03109 ABC1 1.20E-28 CL0016 Cone TF