Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0052 ATGGCAGCTTCGTCTCTTGCCTCTGAGCCAACTCAAGAGATTTTTTCATGGCTGAAAACCCTACCCTTAGCACCTGAGTACCATCCGACTCTAGCCGAGTTCCAAGATCCAATTTCGTACATCTTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCGTTCCTCCTGTTCAACCTTCTTCGAAGAAAACCGCAATTTCGAATCTTAACAAGTCGCTCTTAGCTCGTTCCTCCTCCTCCGACCCGAATAATCCCAAATCCCCGCCCACATTCACTACCCGGCAGCAGCAGATCGGGTTCTGCCCCAGAAGACCCCGGCCCATTCAGAAACCCGTATGGCAGAGCGGCGAGTACTACACTTTCCAGCAATTCGAAGCTAAAGCTAAAAGCTTCGAGAAAAACTACTTAAAAAAATTTGCCAGGAAAGGCGGTGGAGGAGGGGGAGGGCTTTCTCCTCTAGAAATTGAAACCCTATATTGGAAAGCTACGGTTGATAAACCCTTTAGAGTAGAGTATGCGAATGACATGCCGGGATCGGCTTTTATTCCGATTTCTAGCCCGAAGAAGAAGTTAAGTAAGACTGGTTGTAGAGAAGCAGGGGAAGGTGTGAGTTTGGGTGAGACTGACTGGAATATGAGAGGGGTGGCGAGGGCAAAAGGGTCATTGTTGAAGTTCATGAAGGAGGAGATTCCGGGCGTTACTTCTCCAATGGTGTATGTTGCTATGATGTTTAGCTGGTTTGCTTGGCATGTAGAGGACCATGACTTGCATAGCTTAAATTATCTTCATATGGGGGCTGGTAAGACTTGGTATGGTGTGCCTAGAGATGCTGCTGTGGCCTTTGAGGAGGTGATTCGAGTTCATGGATATGGAGGAGAGATCAATCCACTTGTTACTTTTGCGGTACTTGGTGAAAAAACGACGGTTATGTCGCCTGAAGTCTTTATCAATGCAGGGATTCCCTGTTGCAGGTTAGTTCAAAATGCTGGTGAATTTGTCGTCACTTTCCCCAGAGCATATCATACTGGGTTCAGTCACGGTTTCAACTGTGGAGAGGCAACTAATATTGCAACCCCAGAATGGTTGAGATTTGCTAAGGAGGCTGCAATTCGTAGAGCTTCAATCAACTATCCCCCTATGGTCTCTCATTTTCAGTTACTTTACGACCTTGCCCTTGCATTGTGCTCGAGGAAACCCGAGGACATGGGCTCTGAACCAAGGAGCTCAAGGCTGAAAGATAAGAAAAAGAGTGAAGGCGAGACAGTGATAAAAGAGTTGTTTGTACGGAACGTAGAAAAGAATAACGAATTGCTTCATATTCTCGGAAAAGGATCTTCAGTTGTGCTTCTCCCTTGGAATTCAACAGATATCTCTGTCTGTTCAAAATTACGAGTCGGGTCCCACTTAAGAGGAAACCCACCTAGTTTCCCTCCCCTTGGTGTATGCCCTTCTAGGGAATCAATCAAGTCTTCAATTCTAGATCAAGCGAAAGATATCTATCTGCTAAAAGGAGCATTTTCTTCTTCGGTTCATTCAGCAAATGGACATGATTACTCATCTTCTTCAAAAGCTAAAATTTTACATGCTGAAGGGTTGTCAGATCAGAGATTGTTTTCATGCGTTACTTGTGGGATTTTAAACTTTGATTGTTTAGCGGTAATTCAACCCAAAGAAGAAGCTGCTCGGAATCTTATGTCAGCTGACTGTAGCTTCTTTAACGATTGGATTGGCGGCTCTATGTTACCCCATAATGGAGGGGTGGAGAGGAGTGTCCGTGATGATGTGAGTGACGTTCTTGTTCATACCTTGGATGATAAAATTCCGAGAAAAGACGAGGCTGTTATAGCAATTTCGAACAATGATGCTCTTGGTCTGTTGGCTTCGACTTATGGAGATTCATCTGACTCTGAACAAGAAGATCAAACTGAAGATAATACTACTAATTTGTTAAATGGTTGTAGATCGGAAAGTAAAAACGGGTACGAGAATTCCGATTTGCCCTCTACTAGCAATCAGGGTCTTTCTTGTTCAAAGATCAATGGTGGTGATGAAAAGTTTAATTGTTTGGGACAGCTTGAACCAACTGATGACAATGCGGATTCAAATGTAATTTCATGTTCAAATAAGGGTAAAAATAGTATGCAAGAAGATGATAAGTCAGCCATTGTACCAATGGGGGAGAAAAAAAATGTATCGTTTTTCTCGAGATCAGATGAGGACACTTCTCGATTGCATGTCTTTTGCCTTGAACATGCTGTTGAAGTGGAGCAACAGCTTCAGCCAATAGGAGGAGTGCACATAATGTTACTCTGTCATCCAGATTATCCGAAGATAGAGTCAGAAGCGAAAATGGTGGCAGAAGATTTAGGCATTGATCGAATCTGGAATGATATAATATTCCGGGAAGCAACCAAAGAAGATGAGAAGACGATTCAATTAGCTCTTGACAATGAAGAAGCTTTTAATGGAAATGGAAACTGGGCAGTAAAATTGGGCATCAATCTTTTTTACAGTGCGAATCTGAGCCACTCTCCTCTTTACATTAAGCAGATGCCTTACAATTCCGTTATATACAATGCATTTGGCCGCTCTTCTCCTTCTTTCTCGTCCAGAAAAACCAAGGTCTATGAAAGGCGGTCTGGTAGGCAGAAAAGGGTTGTTGCCGGAAAATGGTGCGGAAAAGTCTGGATGTCGAATCAAGTTCATCCGTTTCTAGCGAAGAAGGATACAGAGGAGGAATACGAGGAAGAAAATGATGAAAATGATGATGACAATGATAGAAGCTTCTTTGCTTGGTCAATGCCAAATGAGAAGTTGGGGAGAAAATCAGAGACAGGTACAGCAACAACTAGAAAGGCATCAAGGAAGAGAAAGTTGACATCTAGAAACTTGTCGAACAAGAAATCCAAATGGGTAGAACCCAAGACTTCGATTTTTTCAGAGGATTTGATGCAAGAAGATGATCACCGTCCCTGTTCTTGGCGAAAACAGAGGACTTCTAAAAAACCAAAATTTGTTGAAACAGAGGAGGCATTTTCGGAAGATATGGAAGGAGAAGGTAATTTATGTAGCCAGCATGGAAGGAATTCAACGAGCAAGTATGTTACGTATTTCGAGACCCATGATGATGTGGCGACCTCAGAAAATTCCCTTGGCGAGAATGAAGATGTGGTTTCTGATCAATCACATGGATATAATGACGATCATTATCAGCAATATAGGAGGATTCCTAGAACCAAGCAAGCTAAATGGACAGAGAGAGAAAAGGATGCAGTTTATGATGATTCTCTAGGCGATGAGGAGGAGGAGTCTCATCAGGATCGGAACATTTCGAAAAGCAGGCAAACTAAATGGAACAAGAGCGAAGATGTGGGTTTTTCTGATGAGGATTCTATGGAATATGATTCGCATGAGCCGGTTCCTAGAAGCACACAAGGTAAATGGATTCAGGGGGATGATGACGTCGCTTTTGAGGATTCGCTCCGGAATAGGAGGATTCCAGAAAGAAAATGGATAGAAAGAGGAGATTATTGTGATGATGATGATGATGTGGCTTCTAATGATTCGCTTGGGGACGATTCTCATCAGCAAGGTAGGAGACTTCTAAGAAAAAGGCAACAAGGTGGTGGTGCTATACTTTCTGATGAATCTATGCACAATACTAATTCTTCTCGGCATTATAAGAGGGCTCCAAGAAGCAAGCAAATGAAATTTATTGAGAAAGAAGAGAGAGTTTCAGATGATCTAATCAAGAATGCTTCAAATCATCAGAATACTACTAGGAGGTCACTTAGAAGAAAACCAGCCAAATCGGATTCTGTGCTTCCAATGAGACGAGCAGGTTCTTCTACCCAAGCTAAACTAAGGACCTCTCGTTCTTCAAAATCTAAGAACACCTCTCGGGTTAGATTGTTTGATTCAGATGCTGAAGAAGAAGAACAGGATGAAGAAGACGAAGAAGAAGATGGCTTTGAAGGTGGGCCCAGCACTCGTCCAAGGAGAAGAACCCCAAAGCCAGTTAGAAAATCAGAAGACAAACCGAAAGAGAAAAAGAAGCAACCTAGTAAGAAAAAGGTTACAAACCGAAAAGAAGCTAAAGTGGATGGAGAGGAAGAAGAAGACGAATTGGGTTATGTTTGTGATATTGATGGGTGTTCAATGAGTTTTAGATTGAAAAATGAACTTCTTCTTCATAAAAAGAATATATGTCCCTTAAAGGGCTGTGGGAAGAAGTTCTTTGCGCACAAGTATCTTGTGCAGCATCGTAGGGTTCACGTGGATGACCGGCCACTTAAGTGTCCATGGAAGGGTTGTAAGATGAGCTTCAAATGGCCTTGGGCTCGTACAGAACACATCCGGGTCCACACAGGGGCCCGCCCGTATGTATGTTCCGAGCCCGGGTGTGCTCAGACATTCAGATTCGTCTCGGATTTTAGTCGTCACAAGAGAAAGACAGGTCATTCTGTGAAGAAAGGTAGGAAATGA 4494 42.92 MAASSLASEPTQEIFSWLKTLPLAPEYHPTLAEFQDPISYIFKIEKEASKYGICKIVPPVQPSSKKTAISNLNKSLLARSSSSDPNNPKSPPTFTTRQQQIGFCPRRPRPIQKPVWQSGEYYTFQQFEAKAKSFEKNYLKKFARKGGGGGGGLSPLEIETLYWKATVDKPFRVEYANDMPGSAFIPISSPKKKLSKTGCREAGEGVSLGETDWNMRGVARAKGSLLKFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVIRVHGYGGEINPLVTFAVLGEKTTVMSPEVFINAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEATNIATPEWLRFAKEAAIRRASINYPPMVSHFQLLYDLALALCSRKPEDMGSEPRSSRLKDKKKSEGETVIKELFVRNVEKNNELLHILGKGSSVVLLPWNSTDISVCSKLRVGSHLRGNPPSFPPLGVCPSRESIKSSILDQAKDIYLLKGAFSSSVHSANGHDYSSSSKAKILHAEGLSDQRLFSCVTCGILNFDCLAVIQPKEEAARNLMSADCSFFNDWIGGSMLPHNGGVERSVRDDVSDVLVHTLDDKIPRKDEAVIAISNNDALGLLASTYGDSSDSEQEDQTEDNTTNLLNGCRSESKNGYENSDLPSTSNQGLSCSKINGGDEKFNCLGQLEPTDDNADSNVISCSNKGKNSMQEDDKSAIVPMGEKKNVSFFSRSDEDTSRLHVFCLEHAVEVEQQLQPIGGVHIMLLCHPDYPKIESEAKMVAEDLGIDRIWNDIIFREATKEDEKTIQLALDNEEAFNGNGNWAVKLGINLFYSANLSHSPLYIKQMPYNSVIYNAFGRSSPSFSSRKTKVYERRSGRQKRVVAGKWCGKVWMSNQVHPFLAKKDTEEEYEEENDENDDDNDRSFFAWSMPNEKLGRKSETGTATTRKASRKRKLTSRNLSNKKSKWVEPKTSIFSEDLMQEDDHRPCSWRKQRTSKKPKFVETEEAFSEDMEGEGNLCSQHGRNSTSKYVTYFETHDDVATSENSLGENEDVVSDQSHGYNDDHYQQYRRIPRTKQAKWTEREKDAVYDDSLGDEEEESHQDRNISKSRQTKWNKSEDVGFSDEDSMEYDSHEPVPRSTQGKWIQGDDDVAFEDSLRNRRIPERKWIERGDYCDDDDDVASNDSLGDDSHQQGRRLLRKRQQGGGAILSDESMHNTNSSRHYKRAPRSKQMKFIEKEERVSDDLIKNASNHQNTTRRSLRRKPAKSDSVLPMRRAGSSTQAKLRTSRSSKSKNTSRVRLFDSDAEEEEQDEEDEEEDGFEGGPSTRPRRRTPKPVRKSEDKPKEKKKQPSKKKVTNRKEAKVDGEEEEDELGYVCDIDGCSMSFRLKNELLLHKKNICPLKGCGKKFFAHKYLVQHRRVHVDDRPLKCPWKGCKMSFKWPWARTEHIRVHTGARPYVCSEPGCAQTFRFVSDFSRHKRKTGHSVKKGRK 1497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 271626 278089 - Conep16aG0005200.1 Cone16ag0052 454486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1312 1327 - -
Cone16ag0052 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 1466 1490 IPR013087 -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 910 974 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1155 1180 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 631 679 - -
Cone16ag0052 1497 Gene3D Classic Zinc Finger 1401 1488 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1236 1253 - -
Cone16ag0052 1497 Coils Coil 910 930 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1328 1354 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1280 1301 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 993 1031 - -
Cone16ag0052 1497 SUPERFAMILY Clavaminate synthase-like 221 391 - -
Cone16ag0052 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 1406 1428 IPR013087 -
Cone16ag0052 1497 ProSiteProfiles Zinc finger C2H2 type domain profile. 1404 1433 IPR013087 -
Cone16ag0052 1497 SUPERFAMILY beta-beta-alpha zinc fingers 1420 1462 IPR036236 -
Cone16ag0052 1497 Pfam jmjN domain 25 58 IPR003349 -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 77 99 - -
Cone16ag0052 1497 ProSitePatterns Zinc finger C2H2 type domain signature. 1436 1458 IPR013087 -
Cone16ag0052 1497 Pfam JmjC domain, hydroxylase 241 358 IPR003347 -
Cone16ag0052 1497 ProSiteProfiles JmjN domain profile. 24 65 IPR003349 -
Cone16ag0052 1497 ProSiteProfiles Zinc finger C2H2 type domain profile. 1434 1463 IPR013087 -
Cone16ag0052 1497 ProSiteProfiles Zinc finger C2H2 type domain profile. 1464 1495 IPR013087 -
Cone16ag0052 1497 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1356 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Cone16ag0052 1497 SMART c2h2final6 1464 1490 IPR013087 -
Cone16ag0052 1497 SMART c2h2final6 1434 1458 IPR013087 -
Cone16ag0052 1497 SMART c2h2final6 1381 1403 IPR013087 -
Cone16ag0052 1497 SMART c2h2final6 1404 1428 IPR013087 -
Cone16ag0052 1497 Gene3D Cupin 17 380 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1048 1062 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 993 1014 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 702 721 - -
Cone16ag0052 1497 SUPERFAMILY beta-beta-alpha zinc fingers 1452 1486 IPR036236 -
Cone16ag0052 1497 SMART JmjN_1 23 64 IPR003349 -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 646 679 - -
Cone16ag0052 1497 FunFam Probable lysine-specific demethylase ELF6 1431 1460 - -
Cone16ag0052 1497 ProSiteProfiles JmjC domain profile. 207 376 IPR003347 -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1105 1140 - -
Cone16ag0052 1497 SMART cupin_9 207 376 IPR003347 -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1048 1371 - -
Cone16ag0052 1497 MobiDBLite consensus disorder prediction 1063 1097 - -
Cone16ag0052 1497 FunFam Probable lysine-specific demethylase ELF6 17 380 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0052 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0052 Cone-Chr16:271626 Cone1ag1358 Cone-Chr1:56577853 2.06E-144 dispersed
Cone16ag0052 Cone-Chr16:271626 Cone2ag0949 Cone-Chr2:35142677 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44919 PF10602 RPN7 3.20E-57 CL0020 Cone TF