Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0056 ATGAGAACACCTTCACTACTATCTTCTCTCACTACTATCTCCTTCCTCATCTCTCTCTTAATCCCCACCCTCGTCTCCTCCTTCCGGCCAGTTAATCACCATCATGACCCGGAACTTGTCGTAGAAGACGTCCATAGGAGTATTAATGCATCAAGGAGGAATCTAGCGTATTTTTCGTGTGGGACCGGGAATCCAATCGACGATTGCTGGCGATGCTATCCGAATTGGGAGAAGAACAGGCAAAGGCTAGCCGATTGTGCTATCGGGTTCGGAAAGAATGCCATTGGTGGAAGGGATGGTAAAATCTATGTGGTAACTGATTCGGGTGATGATGACCCAGTGAACCCGAAACCGGGAACTCTCCGACACGCGGTCATTCAGGATGAGCCATTATGGATCATATTTAAACGCGATATGGTGATCAAATTGAAAGAAGAATTGATCATGAACTCGTTCAAAACGATCGACGGTAGAGGAGCCAGCGTGCATATAGCCGGCGGGCCATGCATAACCATCCAATACGTGACAAACATTATCATACATGGATTACACATACACGACTGTAAGCAGGGAGGGAACACTAACGTGAGGGACTCCCCACATCATTATGGGTGGAGAACGTTATCGGACGGTGACGGCGTCTCCATCTTCGGCGGTAGCCATGTGTGGGTCGACCATTGCTCATTGTCAAATTGTGAAGACGGGCTGATTGATGCTATTCATGGGTCCTCTATGATCACAATCTCAAACAATTACATGACACACCATGATAAGGTCATGTTGTTGGGTCATAGTGACTCTTACACTCAAGACAAGAACATGCAAGTCACAATTGCTTTTAATCATTTTGGAGAAGGCCTAGTGCAAAGGATGCCAAGATGTAGGCATGGATATTTTCATGTGGTGAATAATGACTATACTCATTGGGAAATGTATGCAATTGGGGGCAGTGCTGCACCTACTATCAATAGCCAAGGCAACCGATTTCTTGCCCCAGATGCCAGATTCAAAAAAGAGGTGACTAAACATGAGGATGCACCAGAGAGTGACTGGAAGCATTGGAATTGGAGGTCAGAGGGGGACTTGTTACTAAACGGTGCATATTTTACACGGTCAGGAGCTGGAGCTTCATCAAGCTATGCTAGAGCTTCAAGCTTAGGAGCAAAGTCAGCTTCTCTTGTGGGATCCATGACGACTAGTGCAGGTGCACTTGGTTGCAGAAAGGGCTCCCGCTGCTGA 1239 46.81 MRTPSLLSSLTTISFLISLLIPTLVSSFRPVNHHHDPELVVEDVHRSINASRRNLAYFSCGTGNPIDDCWRCYPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIIFKRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNTNVRDSPHHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIHGSSMITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPDARFKKEVTKHEDAPESDWKHWNWRSEGDLLLNGAYFTRSGAGASSSYARASSLGAKSASLVGSMTTSAGALGCRKGSRC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 296641 298507 + Conep16aG0005600.1 Cone16ag0056 454490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0056 412 SMART amb_all 138 335 IPR002022 -
Cone16ag0056 412 SUPERFAMILY Pectin lyase-like 48 406 IPR011050 -
Cone16ag0056 412 Pfam Pectate lyase 146 329 IPR002022 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 210 231 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 110 135 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 86 103 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 146 162 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 383 406 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 312 331 IPR018082 -
Cone16ag0056 412 PRINTS Pollen allergen Amb family signature 354 378 IPR018082 -
Cone16ag0056 412 FunFam Pectate lyase 63 405 - -
Cone16ag0056 412 Gene3D - 63 405 IPR012334 -
Cone16ag0056 412 PANTHER PECTATE LYASE 18-RELATED 21 409 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0572 Cone-Chr14:2824773 Cone16ag0056 Cone-Chr16:296641 1.52E-213 dispersed
Cone16ag0056 Cone-Chr16:296641 Cone7ag0370 Cone-Chr7:1620380 1.13E-216 dispersed
Cone12ag0688 Cone-Chr12:6283813 Cone16ag0056 Cone-Chr16:296641 3.95E-232 wgd
Cone13ag0192 Cone-Chr13:1209138 Cone16ag0056 Cone-Chr16:296641 8.64E-250 wgd
Cone16ag0056 Cone-Chr16:296641 Cone2ag0944 Cone-Chr2:35120894 5.36E-289 wgd
Cone16ag0056 Cone-Chr16:296641 Cone8ag0710 Cone-Chr8:7123264 6.19E-227 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0056 K01728 - mdm:103437645 718.768