Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0059 ATGATGATGATATCGCAAGACGAGATTGCTAGGGATGCGATAAATCACGCTCTCAAGGCGCTTCGGAAACGGCACTTAGTCGAAGAAGGTGCTCATCTCCCAGCTTTTGCTGCTCTTTCTAGACCTATCGTCTCCCAGGGTTCGGAATGGAAGGAGAAAGCAGAGAGTCTGGAATTGGAACTTCAACAATGTTACAAAGCTCAATCCCGATTATCGGAGCAACTTGTGGTGGAAGTTGCTGAATCCAGAGCTTCTAAAGTTTTAATTCAGGAGAAAGACGCTTTAATTGAGAAGCTCCTAAAGGAGTTGACTGAAACAAGGGAAGAATGCGCCCAATTTAAGGCCGATTTAGAAGAGAAAATTGAAGGGCTGGAATTGGTAGTGTCCGAGAATCATGAAATTAAGGGACAGCTAGAAGCAATGGCAGTTAAGGTGAGAAATGCAGAGGCTGAAAATAAGATGTTAGTTGATCGTTGGATGCTGCAAAAAATGCAGGATGCAGAGCGTCTCAATGAGGCAAATGCACTCTACGAAGACATGATTGAACGACTCCGAGCCAGTGGCTTAGAAAAGCTCGCTCGGCAACAAGTAGATGGTGTGGTCCGTCAAAGTGAAGAAGGCGCTGAATATTTTGTGGAGTCAACCATTCCTTCCACTTGCAAACACAGAATCACTGCCCATGAAAGTGGTTGTGCTTCCATACTGTTCCAATACAACTCAGCCAAATTAGTCACTGGAGGACAAGACCGGACAATCAAACTATGGGACACAAACACGGGATCCTTAACTTCCACTCTTCATGGATCCCTAGGTTCAGTTCTTGATCTTACAATCACCCACGATAATCGTTCCATTATTGCGGCAAGCAGTTCAAACAACTTGTATGTGTGGGACATAGGGTCAGGTAGGGTCCGCCACACTCTAACAGGCCATACAGATAAAGTATGTGCCGTAGATGTAAGTAAAGTCTCAAGCCGACATGTGGTTAGTGCTGCTTATGACCGAACGATTAAAGTATGGGATTTACAGAAAGGTTATTGCTCTAACACGATAATGTTCCATAGTAATTGCAATGCGCTTTGCTTTAGTACAGATGGGTTGACTATTTGTTCGGGTCATGTTGATGGGAATCTCCGTTTATGGGATATACAAACAGGAAAACTGCTTAGTGAAGTTGCTTCCCATGCACTTGCTGTTACTTCTATATCTCTGTCTAGAAATGGGAATGTGATTTTAACAAGTGGGAGAGATAATTTGCACAATTTGTTCGATATGAGGTCTCTAGAAGTTTGTGGGACGTTAAGGGCTATGGGAAATAAAGTGGCGTCGAATTGGAGCCGGTCTTGTATTAGTCCGGACGATAATTATGTGGCGGCTGGATCTGCAGATGGGTCTGTTTATATTTGGTCTGTTTCTAAAGGTGATATAGTGACTACTTTGAAAGAGCATACTTCTTCGGTTTTGTGTTGTTCATGGAGTGGTCTTGGTAAACCTCTTGCAACTGCTGATAAGAACGGTGTCGTTTGCACATGGACTTAA 1539 43.53 MMMISQDEIARDAINHALKALRKRHLVEEGAHLPAFAALSRPIVSQGSEWKEKAESLELELQQCYKAQSRLSEQLVVEVAESRASKVLIQEKDALIEKLLKELTETREECAQFKADLEEKIEGLELVVSENHEIKGQLEAMAVKVRNAEAENKMLVDRWMLQKMQDAERLNEANALYEDMIERLRASGLEKLARQQVDGVVRQSEEGAEYFVESTIPSTCKHRITAHESGCASILFQYNSAKLVTGGQDRTIKLWDTNTGSLTSTLHGSLGSVLDLTITHDNRSIIAASSSNNLYVWDIGSGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLQKGYCSNTIMFHSNCNALCFSTDGLTICSGHVDGNLRLWDIQTGKLLSEVASHALAVTSISLSRNGNVILTSGRDNLHNLFDMRSLEVCGTLRAMGNKVASNWSRSCISPDDNYVAAGSADGSVYIWSVSKGDIVTTLKEHTSSVLCCSWSGLGKPLATADKNGVVCTWT 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 311376 314107 - Conep16aG0005900.1 Cone16ag0059 454493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 480 512 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Coils Coil 167 187 - -
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 479 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 FunFam Autophagy-related protein 16 208 512 - -
Cone16ag0059 512 Pfam Autophagy protein 16 (ATG16) 49 171 IPR013923 -
Cone16ag0059 512 Coils Coil 89 120 - -
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 265 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 344 382 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 385 424 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 473 512 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 301 341 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 427 470 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 259 298 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 SMART WD40_4 217 256 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 511 IPR045160 GO:0000045(PANTHER)|GO:0000045(InterPro)|GO:0000421(PANTHER)
Cone16ag0059 512 ProSitePatterns Trp-Asp (WD) repeats signature. 369 383 IPR019775 -
Cone16ag0059 512 Pfam WD domain, G-beta repeat 475 511 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 346 382 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 449 470 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 261 298 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 303 341 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 387 419 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Pfam WD domain, G-beta repeat 219 256 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 350 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 CDD Atg16_CCD 89 174 - -
Cone16ag0059 512 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 Coils Coil 131 158 - -
Cone16ag0059 512 SUPERFAMILY WD40 repeat-like 216 511 IPR036322 GO:0005515(InterPro)
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 345 - -
Cone16ag0059 512 CDD WD40 220 511 - -
Cone16ag0059 512 Gene3D - 77 353 IPR015943 GO:0005515(InterPro)
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats profile. 392 427 IPR001680 GO:0005515(InterPro)
Cone16ag0059 512 PRINTS G protein beta WD-40 repeat signature 243 257 IPR020472 -
Cone16ag0059 512 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Cone16ag0059 512 PRINTS G protein beta WD-40 repeat signature 369 383 IPR020472 -
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 480 512 - -
Cone16ag0059 512 ProSitePatterns Trp-Asp (WD) repeats signature. 243 257 IPR019775 -
Cone16ag0059 512 Gene3D - 354 445 IPR015943 GO:0005515(InterPro)
Cone16ag0059 512 Gene3D - 446 512 IPR015943 GO:0005515(InterPro)
Cone16ag0059 512 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0059 K17890 - - mdm:103455055 835.099
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag1428 Cone-Chr6:11447982 Cone16ag0059 Cone-Chr16:311376 2.63E-06 dispersed
Cone16ag0059 Cone-Chr16:311376 Cone2ag0942 Cone-Chr2:35114856 1.73E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g873 . . Bda06g00626 . . . . Bma12g01063 . . . . . . Sed08g0061 . Cpe04g01594 Bhi02g00574 Tan09g2330 Cmetu06g0240 . Hepe09g0081 . . Cla06g01715 Cam06g1904 Cec06g1954 Cco06g1958 Clacu06g1860 Cmu06g1802 Cre06g2617 Cone2ag0942 Cone16ag0059 . . . . . . . Blo15g00241 . . Bpe07g00867 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01609 Csa01g00087 Chy02g02633 Cme02g02032
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32