Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0060 ATGGGCGGAGTTACTTCTTCAATGGCTGCAAAATTTGCGTTTTTTCCACCAAACCCAGCATCGTACAAGCTCGTAAGAGACGAGCCGACTGGTCTCTGGCTCTTGGACCCATTTCCACACAGAGAAAACGTCGACGTTTTGAAAATCCCAACTCGCCGGGGAAACGAGATCGTCGCCGTTTATGTCCGGTACCCTATGGCGACGACCACCCTGCTTTACTCTCATGGAAATGCTGCTGATATCGGTCAGATGTATGAACTCTTCATCGAATTAAGCATCCATTTGCGCGTTAATCTCATGGGGTATGATTATTCGGGCTATGGGCAGTCATCGGGAAAGCCAAGTGAGCAGAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTTGAAGAAAACTATGGTGCTAAGCAAGAGGAAGTAGTCCTTTATGGCCAATCAGTTGGAAGCGGCCCCACATTAGAGCTAGCCGCTCGTTTAACTAGACTACGAGCAGTTGTTCTTCATAGTCCAATACTATCCGGTTTAAGAGTCATGTACCCTGTAAAACGCACCTACTGGTTTGACATCTATAAGAACATTGACAAAATCCCATCCGTAAAGTGCCCTGTACTCGTAATTCATGGAACTTCTGATGAGGTCGTGAACTTTTCGCACGGGAAACAACTATGGCAGCTATGTCAAGAGAAGTATGAACCATTATGGATAAAAGGGGGGAACCATTGTGATTTAGAATTGTTTCCAGAATATATCCGGCATCTCAAGAAGTTTATAATGACAATCGAAAAATCATCTTCTCAAAGGAATAGTGCAAGGAGAAGCACAAGCACAGATCAAATAGAGCCCTCAAGGCGGAGCACGGATTATATGGAGACTCCGAGGAAGAGCACAGATAGGAGAGAGAAGCCAAGGAAGAGCACCGATCGACCTGAGAAATTGAAAATCCATGATTACAAGTTCCATAGTGTTGAAAAGTTAGATAAGTGGAGAATGTCTTTTGACAGGGTGGAGAGATCAAGGCGAAGTGTTGAATACAACCATGAAAAGTCTCGGAAAAGTGTCGACCATCAATTTGAGAAAGCTCGGAAGAGTGTTGATTGGTTGGATAGGATCCGTGCCGGATAA 1125 44.36 MGGVTSSMAAKFAFFPPNPASYKLVRDEPTGLWLLDPFPHRENVDVLKIPTRRGNEIVAVYVRYPMATTTLLYSHGNAADIGQMYELFIELSIHLRVNLMGYDYSGYGQSSGKPSEQNTYADIEAAYKCLEENYGAKQEEVVLYGQSVGSGPTLELAARLTRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPSVKCPVLVIHGTSDEVVNFSHGKQLWQLCQEKYEPLWIKGGNHCDLELFPEYIRHLKKFIMTIEKSSSQRNSARRSTSTDQIEPSRRSTDYMETPRKSTDRREKPRKSTDRPEKLKIHDYKFHSVEKLDKWRMSFDRVERSRRSVEYNHEKSRKSVDHQFEKARKSVDWLDRIRAG 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 316749 319037 - Conep16aG0006000.1 Cone16ag0060 454494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0060 374 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Cone16ag0060 374 MobiDBLite consensus disorder prediction 265 283 - -
Cone16ag0060 374 Gene3D alpha/beta hydrolase 39 258 IPR029058 -
Cone16ag0060 374 SUPERFAMILY alpha/beta-Hydrolases 8 258 IPR029058 -
Cone16ag0060 374 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 6 261 - -
Cone16ag0060 374 MobiDBLite consensus disorder prediction 265 313 - -
Cone16ag0060 374 MobiDBLite consensus disorder prediction 284 313 - -
Cone16ag0060 374 MobiDBLite consensus disorder prediction 340 359 - -
Cone16ag0060 374 Coils Coil 120 140 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0060 K01076 - - cit:102610686 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0084 Cone-Chr11:362698 Cone16ag0060 Cone-Chr16:316749 1.33E-176 dispersed
Cone16ag0060 Cone-Chr16:316749 Cone18ag1155 Cone-Chr18:8298162 1.37E-147 dispersed
Cone16ag0060 Cone-Chr16:316749 Cone18ag1391 Cone-Chr18:9512633 2.61E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000437 3 6 3 3 4 4 5 4 4 4 3 4 5 4 4 4 4 6 3 4 4 4 4 4 4 2 4 6 4 4 121