Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0064 ATGGAGATGGAGCGCGCAATTGAATTTCCTCACACGCGTATGGATCGACGCCCTAGAAAGAGAGCTCGCTTGGGCTGGGACGTTCTACCTGACACACCGAAGGCTCAGGTAGGAATTCTTTATGGACAAGATTTTGGGAATGTAACAAGCTTTGCACCTTCAAGAGCACCCTCAGATCATACTACTAGTTCTCTATTTGCTAAGGGAGTGGCTCGAAATGGTTCTCCCCCTTGGCGAGAAGATGACAAAGACGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAAATTCATAGCAAGATGGGGGAGGGTACCTTTGGGCAGGTTTTGGAATGTTGGGACAGAGAAAGCAAGGAAATGGTCGCCATAAAAATTGTTCGTGGAATCAAGAAATACCGGGAAGCTGCTATGATAGAGATTGAAGTGCTTCAACAGCTTGGAAAGCATGATAAAGGTGGCAATCGTTGTGTTCAATTACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAGCTTGGACCAAGTTTATACGATTTTCTTCGCAAAAACAGTTATCGCTCCTTTCCCATTGACCTTGTCCGTGAGATTGGCAGACAACTATTGGATTGTGTAGCATTCATGCATGACCTACGGATGATACATACTGACTTGAAGCCCGAGAACATACTTCTGGTTTCTGGAGATAGTGTCAAAGTACCTGATTATAAGAGTTCTTCTCGTTCACCAAAAGACAGTTCCTTCTTTAAAAGAGTGCCCAAGTCAAGTTCCATAAAGGTAATTGACTTTGGAAGCACGATGTATGAATGTCAAGATCAGACATATATCGTTTCAACCCGACATTACCGTGCCCCTGAGGTTATTCTTGGACTTGGATGGAGCTATCCATGTGATGTATGGAGTGTTGGTTGTATATTGGTCGAGCTATGCACGGGTGAGGCATTGTTTCAAACTCACGAAAATTTAGAGCACCTTGCAATGATGGAGCGGGTTCTAGGCCCCCTACCTCAGCACATACTAAAGAGGGTAGACCGACATACTGAGAAATATGTCAGAAGAGGTAGACTAGATTGGCCAGAAGGAGCAACTTCAAGGGATAGTATCAAAGCTGTCCAAAAGCTACCCCGTTTACAGAACTTGATAATGCAGCATGTAGACCATTCAGCAGGGGATATTATCCATCTCCTTCAAGGCCTCCTTAAATATGACCCTTCTGATAGGCTTACAGCTCGCGAAGCTCTAAGGCACCCATTCTTCACACGCGATCACCTTAGAAGATAA 1302 44.09 MEMERAIEFPHTRMDRRPRKRARLGWDVLPDTPKAQVGILYGQDFGNVTSFAPSRAPSDHTTSSLFAKGVARNGSPPWREDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRESKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQLRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGRQLLDCVAFMHDLRMIHTDLKPENILLVSGDSVKVPDYKSSSRSPKDSSFFKRVPKSSSIKVIDFGSTMYECQDQTYIVSTRHYRAPEVILGLGWSYPCDVWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHILKRVDRHTEKYVRRGRLDWPEGATSRDSIKAVQKLPRLQNLIMQHVDHSAGDIIHLLQGLLKYDPSDRLTAREALRHPFFTRDHLRR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 329697 332656 + Conep16aG0006500.1 Cone16ag0064 454498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0064 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0064 433 SUPERFAMILY Protein kinase-like (PK-like) 86 430 IPR011009 -
Cone16ag0064 433 CDD PKc_CLK 86 426 - -
Cone16ag0064 433 FunFam Serine/threonine-protein kinase AFC2 86 179 - -
Cone16ag0064 433 Gene3D Phosphorylase Kinase; domain 1 86 179 - -
Cone16ag0064 433 FunFam Serine/threonine-protein kinase AFC2 175 426 - -
Cone16ag0064 433 ProSiteProfiles Protein kinase domain profile. 99 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0064 433 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 6 429 IPR051175 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)
Cone16ag0064 433 SMART serkin_6 99 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0064 433 Gene3D Transferase(Phosphotransferase) domain 1 153 426 - -
Cone16ag0064 433 Pfam Protein kinase domain 99 426 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0064 K08287 - - vvi:100263937 800.431
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0064 Cone-Chr16:329697 Cone19ag1303 Cone-Chr19:8797272 1.41E-229 dispersed
Cone13ag0182 Cone-Chr13:1132666 Cone16ag0064 Cone-Chr16:329697 3.72E-272 wgd
Cone16ag0064 Cone-Chr16:329697 Cone2ag0939 Cone-Chr2:35101796 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g850 . . Bda06g00620 Bda15g00536 Bpe12g00674 . . . . . . . . . . Cpe20g00341 . . . . . . . . . . . . . . . Cone2ag0939 Cone16ag0064 . . . Csa01g00904 . . . . . . . . . Bma08g00077 . . . . . Car13g00615 Car18g00195 Cpe09g00994 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001120 4 4 1 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 2 2 2 2 2 2 2 2 2 7 6 3 78
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82186 PF02441 Flavoprotein 1.50E-45 No_clan Cone PK