Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0079 ATGGCCGACAACGGAGGAGCTTCGCTACCTTCAGGTCCCGACGCGAAGAAGCGCAGAGTGACCTATTTCTACGAACCTACGATCGGCGACTACTACTACGGCCAAGGCCATCCGATGAAGCCGCACAGAATCCGTATGGCTCACAATCTCATCGTCCACTACGGTCTTCACCGCCGGATGGAGATCAACCGACCTTATCCAGCCGGTTCTGACGACATCCGCCGATTTCACTCACCAGAGTACGTCGATTTTCTCGCTTCCGTTAGTCCGGAAACCCTCTCCGAGCTGACCTTTTCTCGTCACCTGAAGAAATTCAATGTTGGAGAGGATTGTCCTGTTTTTGACGGACTGTTTGGATTCTGTCAGGCTTCTGCTGGAGGTTCTATCGGCGCCGCTGTCAAGCTTAACCGCGGTGATGCTGATATCGCTCTTAATTGGGCCGGTGGGCTCCACCACGCCAAGAAGTCTGAGGCTTCTGGTTTTTGCTACGTCAATGATATTGTTCTTGGTATTCTCGAGCTTCTCAAGCATCACAGGCGTGTACTATATGTAGATATTGACGTCCATCATGGAGATGGGGTTGAGGAGGCGTTTTACACAACTGACAGAGTCATGACTGTGTCTTTTCACAAATTTGGGGATTTCTTTCCAGGTACTGGCCACATTAAGGATGTTGGAGTGGGGTCTGGCAAGCACTATGCCCTAAATGTCCCACTAAATGATGGAATGGATGACGAAAATTTTCGTGGTCTCTTTCGGCCCATCATCCAAAAAGTCATGGAGGTTTATCAGCCAGATGCAGTTGTCCTTCAATGTGGAGCAGATTCATTATCAGGTGATAGGCTAGGATGCTTCAATTTGTCTGTAAGGGGCCATGCAGATTGCCTTCGTTTCTTAAGATCGTTTAATGTTCCTCTTATGGTTTTGGGCGGTGGAGGGTATACAATCAGAAATGTTGCTCGCTGTTGGTGCTACGAGACAGCAGTTGCAGTGGGAGTGGAACCTGATAATAAGTTGCCTTACAACGAATATTATGAGTATTTTGGCCCTGATTATACTCTTCATGTTGAAACATGTAACATGGAGAACCTAAACACAGCTAAAGATATGGAGAAAATAAGGACTACTCTACTAGAACAACTTTCTAGACTACCACATGCACCCAGTGTACCTTTTCAGATGACTCCTGCCTCTGCCGAGCCTCCAGAAGAGGTAGATGAAGACATGGAACGTAGACCCAAACGCCGTATTTGGAACGGTGAAGACTACGAGTCCGATCCTGATGAAGCTGACAAATACTGA 1302 47.62 MADNGGASLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEINRPYPAGSDDIRRFHSPEYVDFLASVSPETLSELTFSRHLKKFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIALNWAGGLHHAKKSEASGFCYVNDIVLGILELLKHHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDVGVGSGKHYALNVPLNDGMDDENFRGLFRPIIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHVETCNMENLNTAKDMEKIRTTLLEQLSRLPHAPSVPFQMTPASAEPPEEVDEDMERRPKRRIWNGEDYESDPDEADKY 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 401802 405179 + Conep16aG0008000.1 Cone16ag0079 454513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0079 433 MobiDBLite consensus disorder prediction 388 433 - -
Cone16ag0079 433 FunFam Histone deacetylase 16 395 - -
Cone16ag0079 433 PANTHER HISTONE DEACETYLASE HDAC1-RELATED 23 374 IPR050284 GO:0004407(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0016575(PANTHER)
Cone16ag0079 433 PRINTS Histone deacetylase superfamily signature 148 171 IPR000286 -
Cone16ag0079 433 PRINTS Histone deacetylase superfamily signature 265 275 IPR000286 -
Cone16ag0079 433 PRINTS Histone deacetylase superfamily signature 180 195 IPR000286 -
Cone16ag0079 433 PRINTS Histone deacetylase signature 226 239 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 243 261 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 105 122 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 167 183 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 72 90 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 126 146 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 PRINTS Histone deacetylase signature 39 56 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 Pfam Histone deacetylase domain 37 328 IPR023801 -
Cone16ag0079 433 Gene3D Histone deacetylase domain 16 391 IPR037138 -
Cone16ag0079 433 PIRSF HDAC_I_euk 3 432 IPR003084 GO:0004407(InterPro)
Cone16ag0079 433 SUPERFAMILY Arginase/deacetylase 18 383 IPR023696 -
Cone16ag0079 433 CDD HDAC_classI 23 330 - -
Cone16ag0079 433 MobiDBLite consensus disorder prediction 405 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0079 K06067 - - csv:101204443 826.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1195 Cone-Chr10:8813223 Cone16ag0079 Cone-Chr16:401802 9.13E-218 dispersed
Cone12ag1282 Cone-Chr12:9789771 Cone16ag0079 Cone-Chr16:401802 2.56E-185 dispersed
Cone16ag0079 Cone-Chr16:401802 Cone8ag1350 Cone-Chr8:10836256 1.13E-222 dispersed
Cone16ag0079 Cone-Chr16:401802 Cone2ag0926 Cone-Chr2:35032890 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g806 . . . Bda15g00544 Bpe12g00667 . . . . . . Cma11g00075 Car10g00090 Car11g00067 . . Cpe04g01577 Bhi02g00504 Tan09g2293 . . Hepe09g0228 . . Cla06g01690 . . . . . . Cone2ag0926 Cone16ag0079 . . . . . . Blo13g00141 . . . . . . Bma08g00086 . Cmo10g00105 Cmo11g00076 . . . . . Cpe18g00862 . . . . . . . . . . . . . . Lsi06g01584 Csa01g00119 Chy02g02608 Cme02g02005
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99