Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0081 ATGGCTTCATCAAGCTCTTACAATTCTCCTTGTGCGGCTTGCAAGTTCTTGAGGCGAAAATGCATGCCGGGTTGCATCTTTGCACCCTACTTCCCTCCGGAAGAACCCCAAAAGTTTGCTAATGTGCACAAGGTTTTTGGAGCAAGCAATGTGACCAAGCTTCTCAATGAGCTCCTCCCTCACCAAAGAGAAGATGCAGTGAACTCTCTAGCCTATGAGGCCGAGGCACGTGTTCGAGACCCCGTTTATGGGTGTGTCGGAGCCATTTCATTCCTTCAAAGACAAGTCCAAAGGCTCCAGAAGGAGCTCGATGCGGCTAATGCCAATCTAATTCGGTATGCTTGTAGTGAATTCCCAACAGGTAGCATCCATACTTTGCCTCATCATGCACCACAAGGGATGCCATTTTCCACGTTTTATAGAAGAATTGGTAATGATCATGGAGGAGGGTTTTATCAACAAGTGACATCTCATAGTTTTCCATTTTCTCCTCTCCCTTGGAATTTTGATAATGACCCTTCTTATGAACACATCAATGGAGGAGGGGGAGGGGGAGGAGACATTATGTGA 570 46.49 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANANLIRYACSEFPTGSIHTLPHHAPQGMPFSTFYRRIGNDHGGGFYQQVTSHSFPFSPLPWNFDNDPSYEHINGGGGGGGDIM 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 414323 414892 + Conep16aG0008200.1 Cone16ag0081 454515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0081 189 Coils Coil 89 116 - -
Cone16ag0081 189 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cone16ag0081 189 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cone16ag0081 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0081 Cone-Chr16:414323 Cone16ag0939 Cone-Chr16:9541773 1.12E-70 dispersed
Cone13ag0160 Cone-Chr13:1004955 Cone16ag0081 Cone-Chr16:414323 4.23E-74 wgd
Cone16ag0081 Cone-Chr16:414323 Cone19ag0159 Cone-Chr19:905693 1.93E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44920 PF02445 NadA 3.00E-33 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0081 - - - 0.0