Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0085 ATGCCTGTAGAACATCATCCATGGAGAACAACAACAGCTATAATCCGCTTCCTCTGTTTCCTCACCTTGTCAATATCCAAACCAGCCACTGCCCTTAATAACCAAGGTCAAGCTCTCCTCTCATGGAAAAACACCCTAAATGGGTCACACCTCCAATCCTTAACAAGTTGGAACCCAAGTGATGAAACTCCATGTGGGTGGTTTGGCATCACCTGCAACTCCAACAAACAAGTAACAGAGTTCAACTTGAACAACTTGGATTTAATGGGTAAGCATCCTTCAAACTTCACTTCCCTCTTGTCCTTAACTAAGCTTGTGTTAACAGCAGTAAACCTCACTGGCTCAATCCCAAAAGAAATAGGCCTCCTCAAAGAACTTACCAAACTTGACCTGAGCCAAAACTCACTGACCGGCTCAATCCCAATTGAGATTTGCTCTTTGCTTAAGCTTCAACAACTCCACCTCAACTCAAATGGCCTTGAAGGCCCAATCCCATCTCAAATTGGTGACCTCTCTAGCTTGAAATGGTTCGTTCTTTATGACAACCAACTTGGTGGTGAGATTCCTAGTACTATTGGAAACTTGAAGAATCTTGAGATCGTTAGAGCTGGTGGGAATAAGAATCTTCAAGGCCCTTTGCCTCAAGAGATTGGTAATTGCACCAACTTAGTTTTCCTCGGCTTGGCAGAAACAAGCATCTCGGGTTCTTTACCGGCCAGTCTTGGACTTCTCCAAAACCTTCAGACACTTGCAATTTATACCTCGCTTTTGTCTGGAGATATCCCGGCCGAGCTCGGAAATTGCGCTCAGCTTGAAAACATCTATTTGTATGAAAACTCGATCTCAGGGTCGATCCCGCAAAGCTTCAGGAACCTTCGGAAACTTCAGAATTTACTTCTATGGCAGAATAATTTGGTGGGTGTATTACCACCCGAGCTCGGCGATTGTGACAAATTGTTGGTCATTGATATTTCTATGAATTCTTTGACTGGAAGTATTCCAGCCTCCTTCGGGAATTTGACTTTTTTACAGGAATTACAGTTGAGTGTGAATCGGATTTCAGGGGAGATTCCGGCTCAAATTGGGAACTGTTTTGGGATTACTCATATAGAGCTCGATAACAATCAGATTACCGGTTCGATTCCAGAAGAGTTGGGGAATCTAGTAAACTTAACCGTTTTGTTCTTGTGGGCGAATAAGCTCGAGGGGAGTATTCCGGGTTCGATTTCAAACTGTCGGAATCTAGAAGGTGTGGATTTGTCTCAGAATGGATTGGTGGGGCCCATTCCGAAGGGGATTTTTCAGCTCAAGAAGTTGAACAAGCTTCTGCTGCTTGATAACAGTCTTTCTGGTGAAATTCCGGCTGAGATTGGGAACTGCTCGGCCCTGATTCGGTTGAGAGCGAGTAAGAACAAGCTCACTGGATCCATTCCGGCTCAAATTGGGAATCTGAAGAATTTGAATTTCTTGGATCTAGGAGAGAACCGTCTTACCGGAGTGATTCCCGACGAGATCGCCGGCTGCCGGAATCTGATGTTTCTCGATCTGCATTCCAACTCGATTTCCGGACATTTGCCGGGAACTCTTAACGAGCTTGTTTCCCTCCAATTCGTTGATTTGTCCAACAATGAAATGGAAGGGATTCTGAATCCGAATCTCGGATCGTTGAGCTCGCTGACCAAATTTGTTCTAGCAAATAACCGATTCACCGGTCCGATTCCAAGTCAACTAGGATCCTGCTTCGTGCTGCAACTGCTCGACCTCAGTGTGAATCAGCTGTCAGGGAATCTTCCGTCGAGCTTGGGGAATATTCCGGTGCTTGAGATCGCACTTAACCTAAGCTACAACCGGTTCACCGGCAAGATTCCGAGAGAGTTCACCAACTTAGACAAGCTTGGAATCTTAGATCTCTCTCACAATGAGCTAACCGGAGATCTTCAATTTCTAGTCGATATGCAAAATCTCGTGGTGCTCAACGTCTCGCACAACAATTTCTCCGGTTCAGTGCCGGACTCGCCGTTCTTCGCGAAGCTTCCATTAAGCGATCTCTCCGGAAATCCAGACCTCTGCTTCTCCGGAAAACAATGCACCGCCGTCAGAAAGGACGGAAATGCCTCCCGGCGTACGGTAGCAGCTCACATAGCGATGGTGGTGCTCCTCTGTACGGCATGCGCACTGCTCCTTGCGGCTTTCTACATCGTTCTCCGATCCAAAAACGTGGGCCTAACAGGCTTCGGTGAGGCCCATGACGAAGACGGCTTCATAAGTGACGTGGAGATGGGACCCAGCTGGGAAGTAACTCTGTATCAGAAACTCGACCTGTCAATCTCCGACGTGGCAAAATGCTTGACAGCTGGCAACATGATTGGACGTGGAAGATCAGGCGTCGTGTATCGTGCAACAATCCCATCAGGTCTAACAATCGCCGTCAAGCGATTCACTGAAACCGAGAAATTCTCCATCTCGGCCTTCTCATCCGAAATCTCCACGTTAGCTAGAATCCGTCACCGAAATATTGTCCGATTACTCGGATGGGCAGCGAACCGGAAAACAAAACTGCTATTTTACGACTACTTGCCAAACGGAAGTTTAGGAGGGTTGTTGCATGGAGAAGGGGGGCGCATAGGATTACTAGAGTGGGAGACGCGGTTTAAGATAGCACTGGGCGTTGCGGAAGGGTTGGCTTATTTGCACCATGATTGTGTACCGGCTATTCTACACCGAGACGTTAAGGCCGATAACATATTGTGTGGGGACCGATATGAACCTTGCTTGGCCGATTTCGGGCTCGCTAGATCGGTGGAAGACGACCGATATGGTTCGTTATCAGCTAACCCACAGTTTGCCGGGTCTTATGGTTACATGGCTCCAGAGTATGGTTGTATGCTAAGAATTACCGAAAAAAGCGACGTGTTTAGCTACGGGGTCGTGCTATTAGAGATCATAACCGGTAAAAAACCGGTTGACCCATCGTTCCCGGAAGGTCAACACATTGTTCAGTGGGCCCGGGATCACTTAAAGAGCAAGAGGGACCCGGTTGAGATACTAGATCCCAAGCTTCAAGGCCATCCAGATACACAAATTCAAGAGATGCTTCAAGCTCTTGGAATATCTCTCCTTTGTACGAGCAATCGGGCAGATGACCGCCCGACAATGAAAGACGTCGCAGCATTATTGGTCGAAGTCCGGCCCGACTTGCCCGGAAACAAGGCACACAACAAGCCCAACAACAACAAATCCTCGAAAAGATTAGAAAGTAGTACTCCTCTATTTTCGACGTCCTCATCGGTCAACCCGGCCCATTTGCTATGCCGACAAGGATCATCTCATTGCTCGTTCACTTACTCTTCTTCCTCGACCAGCTATCCTTCCCAAAATCAATGA 3384 47.31 MPVEHHPWRTTTAIIRFLCFLTLSISKPATALNNQGQALLSWKNTLNGSHLQSLTSWNPSDETPCGWFGITCNSNKQVTEFNLNNLDLMGKHPSNFTSLLSLTKLVLTAVNLTGSIPKEIGLLKELTKLDLSQNSLTGSIPIEICSLLKLQQLHLNSNGLEGPIPSQIGDLSSLKWFVLYDNQLGGEIPSTIGNLKNLEIVRAGGNKNLQGPLPQEIGNCTNLVFLGLAETSISGSLPASLGLLQNLQTLAIYTSLLSGDIPAELGNCAQLENIYLYENSISGSIPQSFRNLRKLQNLLLWQNNLVGVLPPELGDCDKLLVIDISMNSLTGSIPASFGNLTFLQELQLSVNRISGEIPAQIGNCFGITHIELDNNQITGSIPEELGNLVNLTVLFLWANKLEGSIPGSISNCRNLEGVDLSQNGLVGPIPKGIFQLKKLNKLLLLDNSLSGEIPAEIGNCSALIRLRASKNKLTGSIPAQIGNLKNLNFLDLGENRLTGVIPDEIAGCRNLMFLDLHSNSISGHLPGTLNELVSLQFVDLSNNEMEGILNPNLGSLSSLTKFVLANNRFTGPIPSQLGSCFVLQLLDLSVNQLSGNLPSSLGNIPVLEIALNLSYNRFTGKIPREFTNLDKLGILDLSHNELTGDLQFLVDMQNLVVLNVSHNNFSGSVPDSPFFAKLPLSDLSGNPDLCFSGKQCTAVRKDGNASRRTVAAHIAMVVLLCTACALLLAAFYIVLRSKNVGLTGFGEAHDEDGFISDVEMGPSWEVTLYQKLDLSISDVAKCLTAGNMIGRGRSGVVYRATIPSGLTIAVKRFTETEKFSISAFSSEISTLARIRHRNIVRLLGWAANRKTKLLFYDYLPNGSLGGLLHGEGGRIGLLEWETRFKIALGVAEGLAYLHHDCVPAILHRDVKADNILCGDRYEPCLADFGLARSVEDDRYGSLSANPQFAGSYGYMAPEYGCMLRITEKSDVFSYGVVLLEIITGKKPVDPSFPEGQHIVQWARDHLKSKRDPVEILDPKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLVEVRPDLPGNKAHNKPNNNKSSKRLESSTPLFSTSSSVNPAHLLCRQGSSHCSFTYSSSSTSYPSQNQ 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 455027 459479 + Conep16aG0008600.1 Cone16ag0085 454519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0085 1127 Pfam Leucine rich repeat 293 353 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine rich repeat 486 544 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 SUPERFAMILY RNI-like 322 671 - -
Cone16ag0085 1127 PRINTS Leucine-rich repeat signature 126 139 - -
Cone16ag0085 1127 PRINTS Leucine-rich repeat signature 629 642 - -
Cone16ag0085 1127 MobiDBLite consensus disorder prediction 1071 1094 - -
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 336 428 IPR032675 -
Cone16ag0085 1127 SUPERFAMILY Protein kinase-like (PK-like) 773 1059 IPR011009 -
Cone16ag0085 1127 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Cone16ag0085 1127 FunFam Putative LRR receptor-like serine/threonine-protein kinase 611 695 - -
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 32 191 IPR032675 -
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 525 609 IPR032675 -
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 429 524 IPR032675 -
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 610 697 IPR032675 -
Cone16ag0085 1127 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 858 - -
Cone16ag0085 1127 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 564 1056 IPR052592 -
Cone16ag0085 1127 SMART LRR_typ_2 652 676 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 388 412 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 340 364 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 123 147 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 532 556 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 292 316 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 171 195 IPR003591 -
Cone16ag0085 1127 SMART LRR_typ_2 484 507 IPR003591 -
Cone16ag0085 1127 Gene3D Transferase(Phosphotransferase) domain 1 859 1086 - -
Cone16ag0085 1127 SMART serkin_6 783 1066 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0085 1127 Gene3D Ribonuclease Inhibitor 192 335 IPR032675 -
Cone16ag0085 1127 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0085 1127 MobiDBLite consensus disorder prediction 1065 1094 - -
Cone16ag0085 1127 Pfam Protein kinase domain 786 1055 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0085 1127 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 431 525 - -
Cone16ag0085 1127 Gene3D Phosphorylase Kinase; domain 1 765 858 - -
Cone16ag0085 1127 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 859 1078 - -
Cone16ag0085 1127 ProSiteProfiles Protein kinase domain profile. 783 1066 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0085 1127 FunFam Leucine-rich repeat receptor protein kinase EMS1 526 610 - -
Cone16ag0085 1127 SUPERFAMILY RNI-like 81 402 - -
Cone16ag0085 1127 ProSitePatterns Protein kinases ATP-binding region signature. 789 811 IPR017441 GO:0005524(InterPro)
Cone16ag0085 1127 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 207 430 - -
Cone16ag0085 1127 FunFam Nuclear pore complex protein NUP107 32 189 - -
Cone16ag0085 1127 SMART LRR_sd22_2 147 173 - -
Cone16ag0085 1127 SMART LRR_sd22_2 388 420 - -
Cone16ag0085 1127 SMART LRR_sd22_2 484 505 - -
Cone16ag0085 1127 SMART LRR_sd22_2 123 144 - -
Cone16ag0085 1127 SMART LRR_sd22_2 268 294 - -
Cone16ag0085 1127 Pfam Leucine Rich Repeat 583 603 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 390 412 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 654 672 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 270 292 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 558 580 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 611 629 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 367 388 IPR001611 GO:0005515(InterPro)
Cone16ag0085 1127 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1244 Cone-Chr14:10050867 Cone16ag0085 Cone-Chr16:455027 1.08E-130 dispersed
Cone15ag1268 Cone-Chr15:9990878 Cone16ag0085 Cone-Chr16:455027 2.39E-68 dispersed
Cone15ag1269 Cone-Chr15:9993704 Cone16ag0085 Cone-Chr16:455027 1.55E-47 dispersed
Cone16ag0085 Cone-Chr16:455027 Cone4ag1513 Cone-Chr4:11756834 2.16E-98 dispersed
Cone16ag0085 Cone-Chr16:455027 Cone2ag0922 Cone-Chr2:34990626 1.21e-316 wgd
Cone16ag0085 Cone-Chr16:455027 Cone6ag1492 Cone-Chr6:11817691 1.63E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82190 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0085 - - - 0.0