Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0087 ATGTCATCTACAACAAGAGAATCTACTAGAAACGGGCTTGTCCGGAGAATGGCAAGTCTTCCGAGAAGCATTTTAGGAGGATTTTCAAGCATTTTAGGAGGTCATAATAGAGCTATTGGAGGAGGAAGTAGAAACAATGACCATACTCTACTATCCAATCCCGAATTTCAATATCCTGAAACGGGAACAGAAGCATGGGCTTTCCTAACTAATTTCCAGACCAATTACACTACTTTTTCTACTTTACATCCTTTCTTTTATGCTTGTTCTTTCATGGAAGCAATGAAGATAGCAGAAAAAGAGCATAAGTTCTTGTTTATGTATCTTCACTCACCTGAGCACCCATTCACGCCTTCTTTCTGTAAGGAAACACTTTGTTCCGAGCTGGTTGTTCAATTTCTCGATGCTAATTTTATTTGTTGGGGAGCTCTTGCAAATAGAGGAGAAGGGTTACAAATGGCTTCTATGCTTAGACCTGGAAGCTACCCGTTTTGTGCCGTAATTGCTCCTGTTCCTAGTGATAGCATGACCATCTTGCAACAGATGGAAGGGCCGGTTTCCCCAGCTGAGCTGGTGGAGATTCTACAGAGGACAGTAGAAGAACAGGGAATGGCTTTTGAGGGTTCAAAGGCCAAGAAAGAAGAAATAATCAGAGCAGATCGTAGGATAAGAGAAGAGCAAGATGCACAATATCTTGCAGCTCTCCATATAGACAAGGAAAAGGAAAAACTCAAGAATTCACCTATGAAACCAGTAGCAGTTCCGAATAAAGAAAATCATCAGAAGCTAAAGCAAAATCCCAAATCAAAATGGAACAGCAAAGTGGAAGAAGCTAAATCTATTACTCAAACTCCATACAGGGAAGTGGGCGATAGAGACAAGGATTGTCAGGCTACCACACAGATACTGATAAGGTTTCCAAATGGTGAAAAGAGAGAGCAGAGTTTTTCATGCACAGACAAGATGAAATCAATCTACAGATACATTGATTCATTGGGCATACCTGGTATCGGAAACTACAGACTGATATCAAACTTTCCGAGAAGAGTCTATGATGCTGATAAAACGGGAATGACCCTTAAAGAAGTTGGTCTCTATCCTCGAGCAACTCTGTTCCTCGAGCATCAATAG 1131 41.03 MSSTTRESTRNGLVRRMASLPRSILGGFSSILGGHNRAIGGGSRNNDHTLLSNPEFQYPETGTEAWAFLTNFQTNYTTFSTLHPFFYACSFMEAMKIAEKEHKFLFMYLHSPEHPFTPSFCKETLCSELVVQFLDANFICWGALANRGEGLQMASMLRPGSYPFCAVIAPVPSDSMTILQQMEGPVSPAELVEILQRTVEEQGMAFEGSKAKKEEIIRADRRIREEQDAQYLAALHIDKEKEKLKNSPMKPVAVPNKENHQKLKQNPKSKWNSKVEEAKSITQTPYREVGDRDKDCQATTQILIRFPNGEKREQSFSCTDKMKSIYRYIDSLGIPGIGNYRLISNFPRRVYDADKTGMTLKEVGLYPRATLFLEHQ 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 470982 475052 + Conep16aG0008800.1 Cone16ag0087 454521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0087 376 Gene3D Glutaredoxin 56 206 - -
Cone16ag0087 376 MobiDBLite consensus disorder prediction 244 292 - -
Cone16ag0087 376 CDD UBX 302 374 - -
Cone16ag0087 376 SMART 45neu3 67 196 IPR006577 -
Cone16ag0087 376 Gene3D - 294 376 - -
Cone16ag0087 376 SUPERFAMILY Ubiquitin-like 293 374 IPR029071 -
Cone16ag0087 376 SMART ubx_3 292 375 IPR001012 GO:0005515(InterPro)
Cone16ag0087 376 SUPERFAMILY Thioredoxin-like 71 203 IPR036249 -
Cone16ag0087 376 Pfam UBX domain 297 374 IPR001012 GO:0005515(InterPro)
Cone16ag0087 376 MobiDBLite consensus disorder prediction 261 275 - -
Cone16ag0087 376 PANTHER FAS-ASSOCIATED PROTEIN 7 374 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Cone16ag0087 376 CDD UAS 86 201 - -
Cone16ag0087 376 ProSiteProfiles UBX domain profile. 295 373 IPR001012 GO:0005515(InterPro)
Cone16ag0087 376 Pfam Fas-associated factor 1 68 142 IPR049483 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0087 K18726 - - vvi:100241512 432.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0544 Cone-Chr12:3854410 Cone16ag0087 Cone-Chr16:470982 2.34E-57 dispersed
Cone16ag0087 Cone-Chr16:470982 Cone8ag0541 Cone-Chr8:3983151 2.98E-55 dispersed
Cone16ag0087 Cone-Chr16:470982 Cone2ag0920 Cone-Chr2:34972602 4.53E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28