Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0096 ATGAAAATCTCAGCAACCCACCATGAAAGTCATTTCCATGAACCAGCCGGACTTACTGGTTATGTCTTCCAAATAATTTTCCAGATGACTGCAGGGGCCGTCATGCTTACGGATTGCTTGTTTTGGTTCATAATCGTTCCGTTTTTCGCTATCAAAGATTACAATCTAAATTTTTTGATAATCAATATGCATTCGATCAACGCGTTTTTTTTACTCGGCGAAACCACTTTGAATTGCTTGCGGTTTCCTTGGTTTCGAATCGGATACTTCTTCCTCTGGACCACCATTTATGTAATTTTCCAGTGGCTCGTTCATGCTTGCGTCCCTCTCTGGTGGCCATACCCATTTCTTGATCTGTCATCTCCATTCTCTCCCCTGTGGTACTTTTCTGTAGCACTAATGCATATTCCTTGCTATGGGATCTTTGCTCTGATAATGAAGCTGAAACATCATGTTTTTTCAACGTGGGACCCAGGGTCTTACCAGTGTGTTAGGTGA 498 42.17 MKISATHHESHFHEPAGLTGYVFQIIFQMTAGAVMLTDCLFWFIIVPFFAIKDYNLNFLIINMHSINAFFLLGETTLNCLRFPWFRIGYFFLWTTIYVIFQWLVHACVPLWWPYPFLDLSSPFSPLWYFSVALMHIPCYGIFALIMKLKHHVFSTWDPGSYQCVR 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 535203 536325 - Conep16aG0009700.1 Cone16ag0096 454530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0096 165 PANTHER UNCHARACTERIZED 6 157 - GO:0016020(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0096 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0096 Cone-Chr16:535203 Cone17ag0389 Cone-Chr17:1853419 1.53E-53 dispersed
Cone12ag0652 Cone-Chr12:5962917 Cone16ag0096 Cone-Chr16:535203 1.84E-50 wgd
Cone16ag0096 Cone-Chr16:535203 Cone19ag0143 Cone-Chr19:795211 1.79E-36 wgd
Cone16ag0096 Cone-Chr16:535203 Cone2ag0912 Cone-Chr2:34919164 2.80E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g764 . . Bda06g00606 . . . . Bma12g01041 Cmo13g00912 Cmo18g00133 . . . . . Cpe20g00248 . . . . . . . . . . . . . . . Cone2ag0912 Cone16ag0096 . Cone19ag0143 Lsi02g00379 Csa01g00858 . Cme12g01688 . . . . Bpe07g00844 . . . Sed08g2518 . . Cma13g00882 Cma18g00175 Car13g00722 Car18g00165 . . Bhi08g01620 Tan05g2000 Cmetu12g1450 Lac10g0457 Hepe07g2221 . . Cla01g01305 . . Cco01g1464 Clacu01g1370 Cmu01g1277 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000506 3 9 1 2 2 3 5 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 3 3 11 8 4 112