Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0098 ATGCAGAGCGCAGCCGTCACTGCTTTCTCTTACTCTCATCCTCTTTCTAAGCCTCGACTCGCCGTCAATCCAATTCGTCTCTCGTCTTTATCCGTTTCTGCTGTGTTTTCGTCGAATGTCAACGATCTTGGCTCTTCCTGCTCCAACGGTACTCTCTCTTCTTCGTCTTTCGCTGTCCGATCCTGGTCCTTGTCGTCTTCTCCATTTTCTTCGGCGAAGCTAAGACCATGGGCGGGTGTTCCATTTCTCGGTTCTGATTGTGATGCGAATCGGTCCATTGAAGTAAGGGCTACATCAGTGCCGGAAAACGCTGGAGATAAGGCTACCGAGTCTGGGAGCTTGCTTAAGACTCTTGAGCTTGGATCGTTGTTTTGCCTCTGGTACCTCTTCAACATCTACTTTAATATCTACAATAAGCAGGTTTTGAAGGTGTACCCATACCCGGCAACTGTCACTCTAGCTCAATTTGCTGTTGGTACTGTCCTTGTTCTTTTTATGTGGGGTTCTAATCTCTATAAGAAGCCAAAAGTTAGCCATGCACAGCTTGTAGCTATAGTTCCACTTGCAGTTGTTCATGTGTTGGGAAACCTTTTTACTAATATGAGTCTTGGGAAAGTGGCTGTGTCCTTTACTCACACAATCAAAGCTTCTGAGCCTTTCTTCTCCGTCATCCTGTCCTCCATGTTTCTCGGAGAGTTTCCTACCCCATGGGTGGTTGCTTCCCTTTTACCAATTGTTGGAGGTGTGGCATTGGCATCAGCCACTGAGGCCTCATTTAATTGGGCTGGTTTTTGGAGTGCAATGGCTTCCAATTTGTCAAATCAATCCCGTAATGTCCTTAGCAAAAAGGTCATGATCAACAAAGAGGAAACGATCGACAACATCACTTTGTTTTCAATAATAACAATTATGTCATTTTTCTTGGTATCACCTTTCACTATCTTCACCGAAGGCGTCAAGTTTACTCCTGGGTTCCTTCAATCAGCTGGATTAAATGTTAAACAAGTCTATGCTAGGTCTCTTATTGCTGCACTTTCCTTCCATGCTTATCAACAGGTATCTTATATGATATTGCAGAGGGTATCTCCTGTTACTCATTCTGTGGGCAATTGTGTTAAGCGGGTTGTGGTCATTGTGAGCTCTGTTCTCTTCTTCAGAACACCTGTTTCTCCAATAAACTCAATTGGCACGGGAGTGGCTCTTGCTGGAGTTTTCCTATATTCAAGGGTCAAGCGCATCAAGTCAAAGCCAAAGACGGCTTAA 1263 44.58 MQSAAVTAFSYSHPLSKPRLAVNPIRLSSLSVSAVFSSNVNDLGSSCSNGTLSSSSFAVRSWSLSSSPFSSAKLRPWAGVPFLGSDCDANRSIEVRATSVPENAGDKATESGSLLKTLELGSLFCLWYLFNIYFNIYNKQVLKVYPYPATVTLAQFAVGTVLVLFMWGSNLYKKPKVSHAQLVAIVPLAVVHVLGNLFTNMSLGKVAVSFTHTIKASEPFFSVILSSMFLGEFPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNLSNQSRNVLSKKVMINKEETIDNITLFSIITIMSFFLVSPFTIFTEGVKFTPGFLQSAGLNVKQVYARSLIAALSFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVLFFRTPVSPINSIGTGVALAGVFLYSRVKRIKSKPKTA 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 545209 549585 + Conep16aG0009900.1 Cone16ag0098 454532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0098 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 164 253 - -
Cone16ag0098 420 SUPERFAMILY Multidrug resistance efflux transporter EmrE 332 411 - -
Cone16ag0098 420 PANTHER SOLUTE CARRIER FAMILY 35 113 409 IPR050186 GO:0005794(PANTHER)|GO:0015297(PANTHER)
Cone16ag0098 420 Pfam Triose-phosphate Transporter family 119 408 IPR004853 -
Cone16ag0098 420 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 118 418 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0098 Cone-Chr16:545209 Cone9ag1074 Cone-Chr9:6041529 5.31E-70 dispersed
Cone13ag0145 Cone-Chr13:911231 Cone16ag0098 Cone-Chr16:545209 7.83E-208 wgd
Cone16ag0098 Cone-Chr16:545209 Cone19ag0142 Cone-Chr19:787906 3.11E-211 wgd
Cone16ag0098 Cone-Chr16:545209 Cone2ag0910 Cone-Chr2:34906514 1.40E-251 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0098 K15283 - csv:101203848 580.482