Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0103 ATGGCTCTAAATCTGTTGTCTCCAGCTGAAATTAAGGCATCCTTCTTCGATTCCTCCAGCTCCAGCGGCCGTTTACCCAAGCTTCATTCTGGGGGGTTTTCCTTGAAGAAGAAGGATTGCAAGAAAGCAGTCCATGGAAGAGTTCGCTGTTCTGCGGCTTCTACACCGCCTCCTCCAGCTTGGCCAGGAAGGGCTGTTGTGGAACCAGGTTACAAGAAATGGGATGGCCCAAAGCCTATCTCGATTGTTGGATCCACTGGTTCAATTGGAACCCAGACGTTAGATATTGTGGCAGAGAATCCAGAAAAATTCAGAGTCGTGGCTCTTGCAGCTGGTTCCAATGTAACTCTTCTTGCAGAACAGGTGAAGACATTTAAACCCCAACTAGTTTCAGTTAAAAATGAGTCTTTAGCTGAAGAGCTGAAAGAGGCTTTGGCTGGCATGGAGCATAAACCTGAGATTATTCCTGGAGATCAAGGAATCATTGAGGTTGCAAGACACCCAGATGCAGTCACTGTAGTGACAGGAATAGTGGGCTGTGCAGGATTAAAGCCTACCGTGGCTGCTATAGAAGCAGGAAAAGACATAGCTTTGGCCAATAAAGAGACCCTGATTGCTGGGGGTCCCTTTGTCCTTCCTCTTGCACATAAGCATAATGTGAAAATCCTTCCTGCTGATTCAGAGCATTCAGCCATATTTCAGTGTCTTCAAGGCTTGCCAGAGGGTGCACTACGACGCATCATTCTAACTGCATCTGGTGGAGCTTTCAGGGATTTGCCTGTTGAGAAACTGAAAGATGTCAAGGTTGCTGATGCTTTGAAGCATCCTAACTGGAGTATGGGGAAAAAGATTACTGTTGACTCTGCTACACTTTTCAATAAGGGTCTAGAAGTAATTGAAGCCCATTATCTTTTTGGAGCCGACTATGACAATATTGAGATCGTTATTCATCCCCAATCCATCATTCATTCAATGATTGAAACACAGTTTCTTTCTCTGTTTCAAGGATTCATCTGTCTTGGCACAATTGGGCCTGCCCGATATGCGTCTTCCCATCCTCTACACGATTACATGGCCCGAAAGAATTTACTGCTCTGA 1098 45.45 MALNLLSPAEIKASFFDSSSSSGRLPKLHSGGFSLKKKDCKKAVHGRVRCSAASTPPPPAWPGRAVVEPGYKKWDGPKPISIVGSTGSIGTQTLDIVAENPEKFRVVALAAGSNVTLLAEQVKTFKPQLVSVKNESLAEELKEALAGMEHKPEIIPGDQGIIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQCLQGLPEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGADYDNIEIVIHPQSIIHSMIETQFLSLFQGFICLGTIGPARYASSHPLHDYMARKNLLL 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 607976 612308 - Conep16aG0010500.1 Cone16ag0103 454537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0103 365 NCBIfam 1-deoxy-D-xylulose-5-phosphate reductoisomerase 78 332 IPR003821 GO:0008299(InterPro)|GO:0030604(InterPro)|GO:0046872(InterPro)
Cone16ag0103 365 FunFam 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic 72 226 - -
Cone16ag0103 365 Gene3D - 71 226 - -
Cone16ag0103 365 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 64 334 IPR003821 GO:0008299(InterPro)|GO:0030145(PANTHER)|GO:0030604(InterPro)|GO:0030604(PANTHER)|GO:0046872(InterPro)|GO:0051484(PANTHER)|GO:0070402(PANTHER)
Cone16ag0103 365 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 80 208 IPR013512 GO:0070402(InterPro)
Cone16ag0103 365 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 203 328 - -
Cone16ag0103 365 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 222 305 IPR013644 GO:0005515(InterPro)
Cone16ag0103 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 77 226 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0103 K00099 - - sly:543682 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0103 Cone-Chr16:607976 Cone2ag0907 Cone-Chr2:34873291 5.27E-223 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32