Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0107 ATGCCTGGAATTGTATCTGATGAAGTTAAAAGAGAAGAAGAACAAGAGATTGTGAATGAATCAAATGGTGGTAGTAAATCCCCAGATAATAGTATCAATCACAATAACATGGGTTTGAATCCGGAAACTTCTTCTCAACATGTTCATCATGATGATGGGATAGTAGTAGACACTTCGATCGAGAAGCTTTATGAGAACTTATGCGATATGCATAGCTCGGATCAATCCCCTTCAAGACATAGTGGTATTGGATCTGATGCAGAGGAATCTAAGATTGATTCCGAGCTCCGGAATCTTGTTGGAGGAGAGATGAGGGAGGTGGAGATAATCGAAGAAGAGGTGGGAAAATCTGAAAGTGATGATAATCTTCATAGCGATTCTTCTTCATCCAAGAAGGGAAGTAATTCGTCTCCATCTCTGGAAAAACCCGAAACGAAGGAAGTCCTGAAGAAGAATGGGTTGAAAAAGAAAGATTCCGAAAAGGGAACATCATCATCATCTCCATTGAAACCAAGTCCTAGTAAGGGACCAGAGAACAAGAAGCTTCCTAGAAATGTTCAAAAGGAGAAGACTCCGAAAAAGCAAAGCCCAACGAGTACTGCTACTACTACTCTTGTGAAACCAAAGAATTCTCCATTACCCAATGGAGGCGATGATTTGAGTCCGGACTTGGGTCACTTTTTACTCAAGCAAGCAAAGGATCTGATCTCTTCTGGGGATAGTCCACAGAAGGCGCTAGAACTAGCTCTAAGAGCTTCAAAATTATTTGAAATAACCTCGAATGGGAAACCGAGTTTAGAATTGGTGATGTGTTTACATGTAACGGCCGCTATCTACTGCAGCCTGGGACAATATATCGACGCGATCCCTCTTCTAGAACATTCCATAGAGATTCCAAATCCCGAGGAAGGTAAAAAACAAGAACATGCTCTTGCCAAATTTGCCGGGCACATGCAGTTAGGCGATACCCATGCGATGCTCGGTCAGTTGGAGAATTCAATTAGTTGTTATTCAACTGGACTAGAAGTCCAAAGACAAGCTCTTGGACCAACCGACCCAAGAGTCGGGGAAACATGCCGGTACTTAGCCGAGGCTCATGTCCAAGCCCTTCAGTTCGATAATGCCGAGAGGTTTTGCAAGATGGCACTTGACATTCATAAGGAGAATCATTCTCCAGCTTCTTTAGAAGAAGCAGCTGATCTTAGACTGATGGGTTTGATATGTGAGACAAAGGGTGATCATGAAGCTGCCTTAGAACATCTTGTTTTAGCGAGCATGTCCATGGTTGCAAACGGGCAAGAAATGGAAGTGGCTGTAGTGGATTGTAGCATAGGAGATACCTATTTGTCATTGTCTAGGTACGACGAGGCCGTTTTCGCCTATCAGAAAGCACTCACAGTTTTCAAGACGGCTAAAGGGGAGAACCATCCGTCCGTGGGATCGGTTTTTGTTCGGCTGGCGGACTTGTATAACAAGACGGGGAAAGTACGTGAATCGAAATCATATTGCGAGAACGCGCTCCGTATCTACGAAAAGCCTATCCCGGGTATATCCAACGAGGAGATTGCAAGTGGTTTAAGTGACGTTTCCACGATTTATGAATCCATGAACGAGCTCGAGCAAGCTCTTAAGTTGTTGGAAAAGGCATTGAGAATTTATAATAACGTGCCAGGTCAGCAAAATACAATTGCCGGTATCGAGGCTCAGATGGGTGTGATGTATTATATGTTGGGGAACTATTCGGATTCATATGATTCCCTTAAAAATGCTATTTCTAAGCTAAGGGCAAATGGGGAGAAGAAATCGGCTTTCTTCGGGATTGCGCTTAACCAAATGGGGCTTGCTTGTGTTCAACGTTATGTGATAAAAGAGGCGATTGAATTGTTTGAAGAAGCTCGGACAGTGTTGGAACAAGAGTGCGGGCCCTATCATCCCGATACTCTTGGGGTTAATAGCAACCTTGCTGGGACCTACGATGCAGTTGGCAGGTTGGATGAGGCTATTGAGATACTGGAATACGTGGTTGGGATGAGGGAAGATAAGCTTGGGACGGCAAGCCCGGAGGTGGACGATGAGAAGAGGAGGTTGGCCGAGTTATTGAAAGAGACGGGAAGAGTCCGGAACCGGAAAGCCAGGTCACTCGAGAATCTACTTGATTCTAATTCTCAGCCTATACAACAAAGTAGTAGCAGTTAG 2196 44.31 MPGIVSDEVKREEEQEIVNESNGGSKSPDNSINHNNMGLNPETSSQHVHHDDGIVVDTSIEKLYENLCDMHSSDQSPSRHSGIGSDAEESKIDSELRNLVGGEMREVEIIEEEVGKSESDDNLHSDSSSSKKGSNSSPSLEKPETKEVLKKNGLKKKDSEKGTSSSSPLKPSPSKGPENKKLPRNVQKEKTPKKQSPTSTATTTLVKPKNSPLPNGGDDLSPDLGHFLLKQAKDLISSGDSPQKALELALRASKLFEITSNGKPSLELVMCLHVTAAIYCSLGQYIDAIPLLEHSIEIPNPEEGKKQEHALAKFAGHMQLGDTHAMLGQLENSISCYSTGLEVQRQALGPTDPRVGETCRYLAEAHVQALQFDNAERFCKMALDIHKENHSPASLEEAADLRLMGLICETKGDHEAALEHLVLASMSMVANGQEMEVAVVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTAKGENHPSVGSVFVRLADLYNKTGKVRESKSYCENALRIYEKPIPGISNEEIASGLSDVSTIYESMNELEQALKLLEKALRIYNNVPGQQNTIAGIEAQMGVMYYMLGNYSDSYDSLKNAISKLRANGEKKSAFFGIALNQMGLACVQRYVIKEAIELFEEARTVLEQECGPYHPDTLGVNSNLAGTYDAVGRLDEAIEILEYVVGMREDKLGTASPEVDDEKRRLAELLKETGRVRNRKARSLENLLDSNSQPIQQSSSS 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 622001 625159 - Conep16aG0010900.1 Cone16ag0107 454541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0107 731 MobiDBLite consensus disorder prediction 128 142 - -
Cone16ag0107 731 Coils Coil 577 597 - -
Cone16ag0107 731 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 46 724 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 715 731 - -
Cone16ag0107 731 SUPERFAMILY TPR-like 316 421 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 MobiDBLite consensus disorder prediction 143 163 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 192 210 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 1 19 - -
Cone16ag0107 731 Gene3D Tetratricopeptide repeat domain 623 720 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 MobiDBLite consensus disorder prediction 711 731 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 67 220 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 1 54 - -
Cone16ag0107 731 SUPERFAMILY TPR-like 441 676 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 MobiDBLite consensus disorder prediction 84 127 - -
Cone16ag0107 731 Coils Coil 529 556 - -
Cone16ag0107 731 Pfam Tetratricopeptide repeat 443 466 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 ProSiteProfiles TPR repeat profile. 523 556 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 606 639 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 269 302 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 523 556 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 438 471 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 314 347 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 480 513 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 356 389 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 564 597 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 SMART tpr_5 648 681 IPR019734 GO:0005515(InterPro)
Cone16ag0107 731 MobiDBLite consensus disorder prediction 20 44 - -
Cone16ag0107 731 Gene3D Tetratricopeptide repeat domain 218 424 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 Gene3D Tetratricopeptide repeat domain 425 602 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 Pfam Tetratricopeptide repeat 481 554 - -
Cone16ag0107 731 Pfam Tetratricopeptide repeat 608 672 - -
Cone16ag0107 731 Pfam Tetratricopeptide repeat 362 421 - -
Cone16ag0107 731 MobiDBLite consensus disorder prediction 69 83 - -
Cone16ag0107 731 SUPERFAMILY TPR-like 228 343 IPR011990 GO:0005515(InterPro)
Cone16ag0107 731 ProSiteProfiles TPR repeat profile. 438 471 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0107 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0107 Cone-Chr16:622001 Cone9ag0878 Cone-Chr9:4278658 1.81E-226 dispersed
Cone16ag0107 Cone-Chr16:622001 Cone2ag0132 Cone-Chr2:687679 5.21E-258 wgd
Cone16ag0107 Cone-Chr16:622001 Cone2ag0905 Cone-Chr2:34859692 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48