Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0108 ATGCAAATCTTGATGATTTTTTTTTGGTTTACCGACTTTGAGCTCAAACCCATGAAACACATAAACTTTTTCAAACAAACTAATAAGCCAAAAAGGAGGCTATCTCTAGGAGAGTACAAGCGAGCAGTGTCATGGTCGAAGTACTTAGTCTCATCTGGCGCAGAAATCAAAGGAGAAGGAGAAGAAGAATGGAGTGCTGATCTGTCTCAACTCTTCATCGGCTCCAAATTTGCCAATGGAAGACATAGCAGGATTTACAGAGGAGTTTACAAGCAAAAAGATGTTGCTATTAAGATGATAAGTCAGCCTGAAGAGGACGCGAATTTGGCTTCTATGCTTGAAAATCACTTCATTTCTGAAGTGGCCTTGCTCTTTAGGCTGAGCCACCCCAATATCATCACTTTTATTGCGGCTTGTAAGAAACCACCCGTGTTCTGTATCATAACAGAGTACATGGCAGGAGGTTCGTTGAGAAAATATCTTCACCATCAAGAGCCGAATTCGGTCCCACACAACCTAATTTTGAAACTAGCCCTAGATATATCTCGCGGGATGCAATACCTTCATTCCCAAGGAATACTTCATAGGGATCTCAAATCCGAGAATCTGCTTCTGGGTGATGATATGTGTGTTAAGGTGGCGGATTTTGGTATCTCCTGCATAGAATCCGAATGTAGAAGAAGTGAAAAGGGATTTACCGGAACTTACCGTTGGATGGCACCCGAAATGATCAAAGAGAAACACCATACAAAAAAAGTCGATGTTTATAGCTTTGGGATTGTTCTTTGGGAGCTTTTAACTGCATTGATTCCATTCGATAACTTAACTCCCGAACAAGCTGCATTTGCCGTTTGCCAAAAGAATGCAAGGCCGCCATTGCCGTCTGCGTGTCCTTTGGCATTTGGTCATTTGATCAATAGATGTTGGTCAGCCAATGCGGATAAGAGACCGAATTTCGACGAGATTGTTTCGATTCTAGAGGGTTATGAAGAGTCACTCAAGATGGATCCCGATTTCTTCTCATCTTACAAACCTGTGGAACACACTTTTTTCTGGTGCTTGCCAAAATGTATTTCCGGCCAAAGGTCAGCTTCTTTAAAGGCTTAG 1107 42.1 MQILMIFFWFTDFELKPMKHINFFKQTNKPKRRLSLGEYKRAVSWSKYLVSSGAEIKGEGEEEWSADLSQLFIGSKFANGRHSRIYRGVYKQKDVAIKMISQPEEDANLASMLENHFISEVALLFRLSHPNIITFIAACKKPPVFCIITEYMAGGSLRKYLHHQEPNSVPHNLILKLALDISRGMQYLHSQGILHRDLKSENLLLGDDMCVKVADFGISCIESECRRSEKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALIPFDNLTPEQAAFAVCQKNARPPLPSACPLAFGHLINRCWSANADKRPNFDEIVSILEGYEESLKMDPDFFSSYKPVEHTFFWCLPKCISGQRSASLKA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 632936 635519 - Conep16aG0011000.1 Cone16ag0108 454542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0108 368 SUPERFAMILY Protein kinase-like (PK-like) 60 326 IPR011009 -
Cone16ag0108 368 Pfam Protein tyrosine and serine/threonine kinase 74 326 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 ProSiteProfiles Protein kinase domain profile. 71 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 FunFam Serine/threonine-protein kinase isoform 1 61 153 - -
Cone16ag0108 368 PRINTS Tyrosine kinase catalytic domain signature 149 162 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 PRINTS Tyrosine kinase catalytic domain signature 297 319 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 PRINTS Tyrosine kinase catalytic domain signature 234 244 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 PRINTS Tyrosine kinase catalytic domain signature 187 205 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 PRINTS Tyrosine kinase catalytic domain signature 253 275 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 CDD STKc_MAP3K-like 73 326 - -
Cone16ag0108 368 SMART serkin_6 71 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0108 368 PANTHER SERINE-THREONINE PROTEIN KINASE 66 327 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cone16ag0108 368 Gene3D Transferase(Phosphotransferase) domain 1 154 348 - -
Cone16ag0108 368 Gene3D Phosphorylase Kinase; domain 1 59 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0108 Cone-Chr16:632936 Cone2ag0904 Cone-Chr2:34854307 3.35E-212 dispersed
Cone16ag0108 Cone-Chr16:632936 Cone16ag0112 Cone-Chr16:657816 1.17E-68 proximal
Cone13ag0137 Cone-Chr13:792263 Cone16ag0108 Cone-Chr16:632936 2.64E-195 wgd
Cone16ag0108 Cone-Chr16:632936 Cone18ag1359 Cone-Chr18:9340188 1.66E-67 wgd
Cone16ag0108 Cone-Chr16:632936 Cone19ag0138 Cone-Chr19:746743 3.34E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82191 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0108 - - - 0.0