Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0112 ATGAAGGAGAACAACAGTGATGCGTTTGTTAGGGCGGATCAGATTGATCTGAAGAGCTTGGATGAACAGCTTGAAAGGCATCTTAACAAAGCTTGGAGTATGGAGAAGAAGAACAAGACGAAAGAAGAGGACGACGAAGCAGAGGAAGATAGATATCGTGATAGTTTTCTCACTTCCGCCACTAAAGCAGCTGCCTCCATAAGTGCCGCCACCGCCGCATCTACCGCCGCTAAATTGGCGGTTAAGAAGAATCGGCAGGAGTGGGAGATCGACCCGTCTAAGCTCCTTATCAAATCCGTTATAGCTCGGGGCACTTTTGGCACCGTTCATCGCGGTATTTACGATGGTCAAGATGCCGCCGTAAAACTACTTGATTGGGGAGAAGAAGGGCAGAGGACAGAAGCTGAGATAGCTTCTTTAAGGTCCGCATTTCAGCAAGAAGTTGCCGTATGGCATAAACTCGATCATCCTAATGTTACAAAGTTCATAGGTGCGACAATGGGCTCATCAGAATTACTTATACAAAGTGAGAATGGTCAAATCGGGATGCCTAGCAATATATGTTGTGTTGTTGTGGAATATCTTCCCGGAGGCAATTTAAAATCTTATCTTATCAAGAACAGGAGAAGGAAACTAGCTTTCAAGGTGGTTGTTCAGATTGCGCTCGATCTTGCTAGAGGGTTGAGTTACCTTCACTCACAAAAGATTGTTCATCGAGATGTAAAGACGGAGAACATGCTACTCGACAAAACCCGCACAGTCAAAATTGCTGATTTTGGAGTTGCCCGCGTTGAGGCTTCTAATCCCAATGATATGACAGGCGAAACTGGGACACTAGGTTACATGGCTCCAGAGGTTCTTAATGGCAATCCATATAACCGAAAATGCGATGTGTACAGTTTTGGAATTTGTTTGTGGGAAGTTTATTGTTGTGACATGCCTTACCCCGACCTTAGTTTCTCAGAAGTGACTTCCGCTGTTGTTCGCCAGAATCTGCGACCGGAGATTCCGAGATGTTGTCCAGGTTCTTTAGCAAATGTAATGAAGCGATGCTGGGATGCAAACCTGGATAAACGGCCAGAAATGGACGATGTAGTTTCAATGCTGGAAGCCATTGACACATCCAAAGGTGGCGGAATGATCCCTGTTGATCAGCAACAGGGCTGTCTCTGTTTCCGCGTGACTCGAGGGCCCTAA 1197 45.95 MKENNSDAFVRADQIDLKSLDEQLERHLNKAWSMEKKNKTKEEDDEAEEDRYRDSFLTSATKAAASISAATAASTAAKLAVKKNRQEWEIDPSKLLIKSVIARGTFGTVHRGIYDGQDAAVKLLDWGEEGQRTEAEIASLRSAFQQEVAVWHKLDHPNVTKFIGATMGSSELLIQSENGQIGMPSNICCVVVEYLPGGNLKSYLIKNRRRKLAFKVVVQIALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEVYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPGSLANVMKRCWDANLDKRPEMDDVVSMLEAIDTSKGGGMIPVDQQQGCLCFRVTRGP 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 657816 660885 + Conep16aG0011400.1 Cone16ag0112 454546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0112 398 Gene3D Transferase(Phosphotransferase) domain 1 195 387 - -
Cone16ag0112 398 SMART serkin_6 95 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 FunFam Serine/threonine-protein kinase HT1 195 380 - -
Cone16ag0112 398 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 59 370 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cone16ag0112 398 CDD STKc_MAP3K-like 101 369 - -
Cone16ag0112 398 Coils Coil 10 37 - -
Cone16ag0112 398 MobiDBLite consensus disorder prediction 29 52 - -
Cone16ag0112 398 ProSiteProfiles Protein kinase domain profile. 95 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 Gene3D Phosphorylase Kinase; domain 1 83 178 - -
Cone16ag0112 398 PIRSF TyrPK_CSF1-R 193 378 - -
Cone16ag0112 398 PIRSF TyrPK_CSF1-R 8 97 - -
Cone16ag0112 398 PRINTS Tyrosine kinase catalytic domain signature 192 205 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 PRINTS Tyrosine kinase catalytic domain signature 230 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 PRINTS Tyrosine kinase catalytic domain signature 340 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 PRINTS Tyrosine kinase catalytic domain signature 296 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 SUPERFAMILY Protein kinase-like (PK-like) 81 369 IPR011009 -
Cone16ag0112 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 Pfam Protein tyrosine and serine/threonine kinase 97 369 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone16ag0112 398 FunFam Kinase suppressor of Ras 1 84 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0112 Cone-Chr16:657816 Cone2ag0900 Cone-Chr2:34824127 4.84E-258 dispersed
Cone16ag0108 Cone-Chr16:632936 Cone16ag0112 Cone-Chr16:657816 1.17E-68 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82192 PF19078 Big_12 1.50E-06 CL0159 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0112 - - - 0.0