Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0112 | ATGAAGGAGAACAACAGTGATGCGTTTGTTAGGGCGGATCAGATTGATCTGAAGAGCTTGGATGAACAGCTTGAAAGGCATCTTAACAAAGCTTGGAGTATGGAGAAGAAGAACAAGACGAAAGAAGAGGACGACGAAGCAGAGGAAGATAGATATCGTGATAGTTTTCTCACTTCCGCCACTAAAGCAGCTGCCTCCATAAGTGCCGCCACCGCCGCATCTACCGCCGCTAAATTGGCGGTTAAGAAGAATCGGCAGGAGTGGGAGATCGACCCGTCTAAGCTCCTTATCAAATCCGTTATAGCTCGGGGCACTTTTGGCACCGTTCATCGCGGTATTTACGATGGTCAAGATGCCGCCGTAAAACTACTTGATTGGGGAGAAGAAGGGCAGAGGACAGAAGCTGAGATAGCTTCTTTAAGGTCCGCATTTCAGCAAGAAGTTGCCGTATGGCATAAACTCGATCATCCTAATGTTACAAAGTTCATAGGTGCGACAATGGGCTCATCAGAATTACTTATACAAAGTGAGAATGGTCAAATCGGGATGCCTAGCAATATATGTTGTGTTGTTGTGGAATATCTTCCCGGAGGCAATTTAAAATCTTATCTTATCAAGAACAGGAGAAGGAAACTAGCTTTCAAGGTGGTTGTTCAGATTGCGCTCGATCTTGCTAGAGGGTTGAGTTACCTTCACTCACAAAAGATTGTTCATCGAGATGTAAAGACGGAGAACATGCTACTCGACAAAACCCGCACAGTCAAAATTGCTGATTTTGGAGTTGCCCGCGTTGAGGCTTCTAATCCCAATGATATGACAGGCGAAACTGGGACACTAGGTTACATGGCTCCAGAGGTTCTTAATGGCAATCCATATAACCGAAAATGCGATGTGTACAGTTTTGGAATTTGTTTGTGGGAAGTTTATTGTTGTGACATGCCTTACCCCGACCTTAGTTTCTCAGAAGTGACTTCCGCTGTTGTTCGCCAGAATCTGCGACCGGAGATTCCGAGATGTTGTCCAGGTTCTTTAGCAAATGTAATGAAGCGATGCTGGGATGCAAACCTGGATAAACGGCCAGAAATGGACGATGTAGTTTCAATGCTGGAAGCCATTGACACATCCAAAGGTGGCGGAATGATCCCTGTTGATCAGCAACAGGGCTGTCTCTGTTTCCGCGTGACTCGAGGGCCCTAA | 1197 | 45.95 | MKENNSDAFVRADQIDLKSLDEQLERHLNKAWSMEKKNKTKEEDDEAEEDRYRDSFLTSATKAAASISAATAASTAAKLAVKKNRQEWEIDPSKLLIKSVIARGTFGTVHRGIYDGQDAAVKLLDWGEEGQRTEAEIASLRSAFQQEVAVWHKLDHPNVTKFIGATMGSSELLIQSENGQIGMPSNICCVVVEYLPGGNLKSYLIKNRRRKLAFKVVVQIALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEVYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPGSLANVMKRCWDANLDKRPEMDDVVSMLEAIDTSKGGGMIPVDQQQGCLCFRVTRGP | 398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 657816 | 660885 | + | Conep16aG0011400.1 | Cone16ag0112 | 454546 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0112 | 398 | Gene3D | Transferase(Phosphotransferase) domain 1 | 195 | 387 | - | - | |
Cone16ag0112 | 398 | SMART | serkin_6 | 95 | 372 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | FunFam | Serine/threonine-protein kinase HT1 | 195 | 380 | - | - | |
Cone16ag0112 | 398 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 59 | 370 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Cone16ag0112 | 398 | CDD | STKc_MAP3K-like | 101 | 369 | - | - | |
Cone16ag0112 | 398 | Coils | Coil | 10 | 37 | - | - | |
Cone16ag0112 | 398 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
Cone16ag0112 | 398 | ProSiteProfiles | Protein kinase domain profile. | 95 | 372 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | Gene3D | Phosphorylase Kinase; domain 1 | 83 | 178 | - | - | |
Cone16ag0112 | 398 | PIRSF | TyrPK_CSF1-R | 193 | 378 | - | - | |
Cone16ag0112 | 398 | PIRSF | TyrPK_CSF1-R | 8 | 97 | - | - | |
Cone16ag0112 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 192 | 205 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 230 | 248 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 340 | 362 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | PRINTS | Tyrosine kinase catalytic domain signature | 296 | 318 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | SUPERFAMILY | Protein kinase-like (PK-like) | 81 | 369 | IPR011009 | - | |
Cone16ag0112 | 398 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 236 | 248 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | Pfam | Protein tyrosine and serine/threonine kinase | 97 | 369 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone16ag0112 | 398 | FunFam | Kinase suppressor of Ras 1 | 84 | 179 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0112 | Cone-Chr16:657816 | Cone2ag0900 | Cone-Chr2:34824127 | 4.84E-258 | dispersed | |
Cone16ag0108 | Cone-Chr16:632936 | Cone16ag0112 | Cone-Chr16:657816 | 1.17E-68 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
82192 | PF19078 | Big_12 | 1.50E-06 | CL0159 | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0112 | - | - | - | 0.0 |