Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0127 | ATGGGTGGAAATGGAAAGCACAGGTGGAAATTCTCAATCCATCGGACTTCAACAAGTTCAAAGCTCGAACCGAAAGCACCGCCTAAAGAGTTCGTCTGCCCCATATCTAGATCTTTAATGGCAGATCCTGTGGTTGTTTCCACAGGCCAGACCTTTGAGCGAGTTTCAGCTCAAGTTTGCAGAGATTTAAACTTTTCTCCCAAGCTTGAAGAAGACGGCTCGAACCCTGATTTCTCCAACATGATCACTAATGTGAACATCAAAACGACGATTCTCAATTGGTGTCGCGATTCCGGTACGCCGCCGCCGCGAGCTCCTGATTACGCTTCTGTTGAGAGAATCGTCCGAAGGTTGATCGGCGAGCAGAGACCGGAGCTGAGTCTTAGGGTTTCGGAACGCGAGTTGTTGAAAGGCGTCGCAGAAACACCGCCGGTGAAGTTCACTCACGCGGTGACGGAGTTAGGTCATCGGGTCAATCACTTCTACTCGAGCTCGTCGGAGGAATCCGTTGTCATCGGAGCCGGTAGCACGCCGGGAACTCCTCTTCTGTTCACAACTCGACCGGCCTGTTACTCGTCATCTTCTTCCTCCTCCTCTGGAATCGTCGAAACAGAAACCCTAATCCCTAATTCCACCTCTTCGGAAGAAGAGGCGAGATTACTGCAGAAGCTTAAAAGTTCCGAAGTGGTTAATCAAGAAGAAGGTGTGATTTCTCTGAGGAAGATCACCAGATCAAACGAGCAAGCTAGGGTTTCGCTCTGTACGCCATTGTTACTCTTAGCTCTAAGAAATCTCATTCCGTCCCGATACACCGTCGTTCAGGTCAACGCAGTAGCTTCCTTGGTCAACCTCTCGCTCGAAAAGCCCAATAAATTGAAGATCGTACGGTCGGGATTCGCCCCCCTATTGATCGACGTGTTAAAGAGTGGACTCAGTGAGTCACAAGAACACGCTGCCGGCGCGCTCTTCAGCTTAGCTTTAGAAGACGAGAACAAGATGGCGATTGGAGTTCTCGGCGCGTTGGAACCGTTAATGCACGCGCTGAGGTCAGAAAGTGAGCGGACTCGGAATGACTCGGCGCTTTGTTTGTACCATCTGAGTCTGACTCAGAGCAACCGAGTCAAACTCGTAAAACTCGGTGCTGTTCCAACCCTGTTATCTATGGTTAAATCCAGTAAGTTAACGAGCCGGGTCTTGTTAATTCTATGTAATTTAGCGGTTTCTCACGAGGGGAGATTTGCCATGCTTGATGGTAATGGAGTTGGGATTTTGGTTGGAATGTTGAGGGAGAACGAGTTGGATTCGTCAACCCGGGAGAACTGTGTGACGGCGCTTTATGCAATGAGTCATGGCGGGTTTAGGTTTAAAGGGTTGGCAAAGGAGGCGAGAGCGGTGGAGGTGTTGAGGGAGGTGGAAGAGAGAGGGAGTGAGAGAGCAAAAGAGAAGGCGAAGAGGATTTTGCAGATGATGAAAGGGAGAGAGGAGAGGGATGATGAGTTCGACTGGTTGAACAAATCGGATCTCGACTCGGATGAACTCGGTTGGACTCACAACCGAGTTGGAGTTGGTGGGAAAAACACAAACTCAACCGACTTTTAA | 1599 | 49.66 | MGGNGKHRWKFSIHRTSTSSKLEPKAPPKEFVCPISRSLMADPVVVSTGQTFERVSAQVCRDLNFSPKLEEDGSNPDFSNMITNVNIKTTILNWCRDSGTPPPRAPDYASVERIVRRLIGEQRPELSLRVSERELLKGVAETPPVKFTHAVTELGHRVNHFYSSSSEESVVIGAGSTPGTPLLFTTRPACYSSSSSSSSGIVETETLIPNSTSSEEEARLLQKLKSSEVVNQEEGVISLRKITRSNEQARVSLCTPLLLLALRNLIPSRYTVVQVNAVASLVNLSLEKPNKLKIVRSGFAPLLIDVLKSGLSESQEHAAGALFSLALEDENKMAIGVLGALEPLMHALRSESERTRNDSALCLYHLSLTQSNRVKLVKLGAVPTLLSMVKSSKLTSRVLLILCNLAVSHEGRFAMLDGNGVGILVGMLRENELDSSTRENCVTALYAMSHGGFRFKGLAKEARAVEVLREVEERGSERAKEKAKRILQMMKGREERDDEFDWLNKSDLDSDELGWTHNRVGVGGKNTNSTDF | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 718916 | 720909 | - | Conep16aG0012900.1 | Cone16ag0127 | 454561 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0127 | 532 | SUPERFAMILY | ARM repeat | 220 | 490 | IPR016024 | - | |
| Cone16ag0127 | 532 | PANTHER | U BOX DOMAIN-CONTAINING | 21 | 491 | - | - | |
| Cone16ag0127 | 532 | Pfam | U-box domain | 28 | 95 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone16ag0127 | 532 | ProSiteProfiles | U-box domain profile. | 26 | 101 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone16ag0127 | 532 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 380 | 420 | IPR000225 | GO:0005515(InterPro) | |
| Cone16ag0127 | 532 | FunFam | RING-type E3 ubiquitin transferase | 215 | 490 | - | - | |
| Cone16ag0127 | 532 | SMART | arm_5 | 408 | 450 | IPR000225 | GO:0005515(InterPro) | |
| Cone16ag0127 | 532 | SMART | arm_5 | 328 | 368 | IPR000225 | GO:0005515(InterPro) | |
| Cone16ag0127 | 532 | SMART | arm_5 | 369 | 407 | IPR000225 | GO:0005515(InterPro) | |
| Cone16ag0127 | 532 | SMART | arm_5 | 287 | 327 | IPR000225 | GO:0005515(InterPro) | |
| Cone16ag0127 | 532 | Gene3D | - | 212 | 332 | IPR011989 | - | |
| Cone16ag0127 | 532 | Gene3D | - | 333 | 490 | IPR011989 | - | |
| Cone16ag0127 | 532 | SMART | Ubox_2 | 30 | 94 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
| Cone16ag0127 | 532 | SUPERFAMILY | RING/U-box | 14 | 101 | - | - | |
| Cone16ag0127 | 532 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cone16ag0127 | 532 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 100 | IPR013083 | - | |
| Cone16ag0127 | 532 | Pfam | Armadillo/beta-catenin-like repeat | 329 | 367 | IPR000225 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0127 | Cone-Chr16:718916 | Cone8ag0150 | Cone-Chr8:776871 | 9.54E-10 | dispersed | |
| Cone13ag0120 | Cone-Chr13:709968 | Cone16ag0127 | Cone-Chr16:718916 | 1.57E-112 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone16ag0900 | Cone-Chr16:9344124 | 1.79E-101 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone19ag0122 | Cone-Chr19:685798 | 2.61E-111 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone2ag0153 | Cone-Chr2:794797 | 2.73E-98 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone2ag0881 | Cone-Chr2:34729517 | 2.02E-241 | wgd | |
| Cone16ag0127 | Cone-Chr16:718916 | Cone6ag1431 | Cone-Chr6:11480343 | 1.54E-08 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0127 | - | - | - | 0.0 |