Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0130 ATGGCGGCTGCTTCCTCCTCCATGCCTCAGTCTTCTTCCTCCAAAGACCACAACTATAGCAGGAAACTGAAATCTCTCGGTCTTCTCTGCACCAAATTTCTGAGCTTGTACGACAGTCATGGCGACCACTCCATTGGCCTCGATGATGCAGCATCCAAATTAGGTGTTGAGAGGCGGCGGATCTATGATATTGTAAATGTCTTGGAAAGTGTAGGGGTTCTTGCGAGGAAGGGAAAACGTCAGTACATTTGGAAAGGGTATGGAGCAATACCTGCTGCTTTACAAGAGCTTAAGGAAGAGGGCATGAATGATAATTGCTATGGTTCTGATGCTAACGATGGCACGAGAGTCTCGGATGATGAAGATGATGATGAAGAAGGGTGTACAAATCCCAACACTGGGAGCCAGAACTTAATCAATACCAGTTCTAAATCTTCAGGATCAACAAAAAATGATAACCGGAGGGAGAAATCTTTGGCACTTCTTGCACAGAATTTTGTGAAGCTCTTTGTCTGCTCTAGTGTGGATCTTATTTCTCTTGATGACGCTGCAAAGTTGTTGATAGGGGATGTGAACAGCTCAGCGTTAATGAGAACGAAAGTAAGACGGCTATACGATATTGCAAATGTATTGTCTTCAATGGCCTTAATAGAGAAGACCTATACATCAGCCAGAAGAAAGCCTGCATTTAGATGGTTGGGATTAAGAGGGCAATATAAGGATGAGTCTGCTTTTAGTGTGCTTCCCCCAGAGTCCGTGAAACGGAAATTTGGAACTGATATGACAAACATGAGTTGTAAGACGAGCAGAATAGGAAGTTCAATGGGACAGAGTGCGACCTGGAACTCTAACATGCAAAAGCAATTGAAAAAAAATAATTTTCCAACCGAGGTCGATGAAAATTATTTAGAGCGAGAATGTATTGAGGGCCAAAGGAGCTACCAGTTTGGACCCTTTGCTCCTGCAGCCATGGCCAAGGTTGGTGTCTCTAACAATACTTACAATGTGAACACGGTTCATGACTGGAACAACCTTGCCTCTACTTATCGTCCTCAGTATCAGAATCAAGCCTTACAACAACTCTTCGATCATTACTCCGAAGCATGGAAATCTTGGTTTTCGGAAGCCGCAAAGAAACCGATATGA 1146 43.54 MAAASSSMPQSSSSKDHNYSRKLKSLGLLCTKFLSLYDSHGDHSIGLDDAASKLGVERRRIYDIVNVLESVGVLARKGKRQYIWKGYGAIPAALQELKEEGMNDNCYGSDANDGTRVSDDEDDDEEGCTNPNTGSQNLINTSSKSSGSTKNDNRREKSLALLAQNFVKLFVCSSVDLISLDDAAKLLIGDVNSSALMRTKVRRLYDIANVLSSMALIEKTYTSARRKPAFRWLGLRGQYKDESAFSVLPPESVKRKFGTDMTNMSCKTSRIGSSMGQSATWNSNMQKQLKKNNFPTEVDENYLERECIEGQRSYQFGPFAPAAMAKVGVSNNTYNVNTVHDWNNLASTYRPQYQNQALQQLFDHYSEAWKSWFSEAAKKPI 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 738356 740708 - Conep16aG0013200.1 Cone16ag0130 454564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0130 381 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 SMART E2F_TDP_2 21 86 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 MobiDBLite consensus disorder prediction 104 152 - -
Cone16ag0130 381 MobiDBLite consensus disorder prediction 129 148 - -
Cone16ag0130 381 Gene3D - 16 89 IPR036388 -
Cone16ag0130 381 Gene3D - 148 236 IPR036388 -
Cone16ag0130 381 FunFam E2F transcription factor-like E2FE 149 236 - -
Cone16ag0130 381 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Cone16ag0130 381 SUPERFAMILY Winged helix DNA-binding domain 21 84 IPR036390 -
Cone16ag0130 381 PANTHER TRANSCRIPTION FACTOR E2F 8 357 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone16ag0130 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 86 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 FunFam E2F transcription factor 8 16 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0130 K09391 - - csv:101219210 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0130 Cone-Chr16:738356 Cone1ag0555 Cone-Chr1:5528938 5.82E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone16ag0130 Cone-Chr16:738356 1.45E-139 wgd
Cone16ag0130 Cone-Chr16:738356 Cone19ag0118 Cone-Chr19:663153 2.24E-134 wgd
Cone16ag0130 Cone-Chr16:738356 Cone2ag0880 Cone-Chr2:34706175 1.47E-226 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44921 PF03630 Fumble 3.40E-133 CL0108 Cone TF