Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0130 ATGGCGGCTGCTTCCTCCTCCATGCCTCAGTCTTCTTCCTCCAAAGACCACAACTATAGCAGGAAACTGAAATCTCTCGGTCTTCTCTGCACCAAATTTCTGAGCTTGTACGACAGTCATGGCGACCACTCCATTGGCCTCGATGATGCAGCATCCAAATTAGGTGTTGAGAGGCGGCGGATCTATGATATTGTAAATGTCTTGGAAAGTGTAGGGGTTCTTGCGAGGAAGGGAAAACGTCAGTACATTTGGAAAGGGTATGGAGCAATACCTGCTGCTTTACAAGAGCTTAAGGAAGAGGGCATGAATGATAATTGCTATGGTTCTGATGCTAACGATGGCACGAGAGTCTCGGATGATGAAGATGATGATGAAGAAGGGTGTACAAATCCCAACACTGGGAGCCAGAACTTAATCAATACCAGTTCTAAATCTTCAGGATCAACAAAAAATGATAACCGGAGGGAGAAATCTTTGGCACTTCTTGCACAGAATTTTGTGAAGCTCTTTGTCTGCTCTAGTGTGGATCTTATTTCTCTTGATGACGCTGCAAAGTTGTTGATAGGGGATGTGAACAGCTCAGCGTTAATGAGAACGAAAGTAAGACGGCTATACGATATTGCAAATGTATTGTCTTCAATGGCCTTAATAGAGAAGACCTATACATCAGCCAGAAGAAAGCCTGCATTTAGATGGTTGGGATTAAGAGGGCAATATAAGGATGAGTCTGCTTTTAGTGTGCTTCCCCCAGAGTCCGTGAAACGGAAATTTGGAACTGATATGACAAACATGAGTTGTAAGACGAGCAGAATAGGAAGTTCAATGGGACAGAGTGCGACCTGGAACTCTAACATGCAAAAGCAATTGAAAAAAAATAATTTTCCAACCGAGGTCGATGAAAATTATTTAGAGCGAGAATGTATTGAGGGCCAAAGGAGCTACCAGTTTGGACCCTTTGCTCCTGCAGCCATGGCCAAGGTTGGTGTCTCTAACAATACTTACAATGTGAACACGGTTCATGACTGGAACAACCTTGCCTCTACTTATCGTCCTCAGTATCAGAATCAAGCCTTACAACAACTCTTCGATCATTACTCCGAAGCATGGAAATCTTGGTTTTCGGAAGCCGCAAAGAAACCGATATGA 1146 43.54 MAAASSSMPQSSSSKDHNYSRKLKSLGLLCTKFLSLYDSHGDHSIGLDDAASKLGVERRRIYDIVNVLESVGVLARKGKRQYIWKGYGAIPAALQELKEEGMNDNCYGSDANDGTRVSDDEDDDEEGCTNPNTGSQNLINTSSKSSGSTKNDNRREKSLALLAQNFVKLFVCSSVDLISLDDAAKLLIGDVNSSALMRTKVRRLYDIANVLSSMALIEKTYTSARRKPAFRWLGLRGQYKDESAFSVLPPESVKRKFGTDMTNMSCKTSRIGSSMGQSATWNSNMQKQLKKNNFPTEVDENYLERECIEGQRSYQFGPFAPAAMAKVGVSNNTYNVNTVHDWNNLASTYRPQYQNQALQQLFDHYSEAWKSWFSEAAKKPI 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 738356 740708 - Conep16aG0013200.1 Cone16ag0130 454564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0130 381 SMART E2F_TDP_2 154 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 SMART E2F_TDP_2 21 86 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 MobiDBLite consensus disorder prediction 104 152 - -
Cone16ag0130 381 MobiDBLite consensus disorder prediction 129 148 - -
Cone16ag0130 381 Gene3D - 16 89 IPR036388 -
Cone16ag0130 381 Gene3D - 148 236 IPR036388 -
Cone16ag0130 381 FunFam E2F transcription factor-like E2FE 149 236 - -
Cone16ag0130 381 SUPERFAMILY Winged helix DNA-binding domain 156 235 IPR036390 -
Cone16ag0130 381 SUPERFAMILY Winged helix DNA-binding domain 21 84 IPR036390 -
Cone16ag0130 381 PANTHER TRANSCRIPTION FACTOR E2F 8 357 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone16ag0130 381 Pfam E2F/DP family winged-helix DNA-binding domain 24 86 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 Pfam E2F/DP family winged-helix DNA-binding domain 155 234 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone16ag0130 381 FunFam E2F transcription factor 8 16 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0130 Cone-Chr16:738356 Cone1ag0555 Cone-Chr1:5528938 5.82E-09 dispersed
Cone13ag0116 Cone-Chr13:694206 Cone16ag0130 Cone-Chr16:738356 1.45E-139 wgd
Cone16ag0130 Cone-Chr16:738356 Cone19ag0118 Cone-Chr19:663153 2.24E-134 wgd
Cone16ag0130 Cone-Chr16:738356 Cone2ag0880 Cone-Chr2:34706175 1.47E-226 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44921 PF03630 Fumble 3.40E-133 CL0108 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0130 K09391 - csv:101219210 460.685