Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0133 ATGTCGAGCACGGCCGCTGTTACTGATTCTACCGTCACCGGAGGCGGATTTGCTAATGCGATCATTCTGTTTGGAGTTCGAGTGGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTGTCGCAATACGAGCATCATCGAGATCACTCCGACAACAACGACGATAAGAGTAAGACTTGCAATAAGATCTCTTCCGTCGATGTCGATCATAAAGACGACGTTGCTGCGGCTGGTTACGCCTCCGCAGATGACGTTGTTCCGAACTCCGGCACAAATCACCAGCGAGAACGCAAGCGAGGAGTACCATGGACAGAGGAAGAGCATAAGCTTTTCCTGTTAGGATTGCAGAAAGTAGGAAAAGGAGATTGGAGAGGAATCTCGAGGAATTTCGTTAAGACTCGAACTCCAACTCAGGTGGCCAGCCACGCGCAGAAGTACTTTCTCCGACGGAGCAACCTCAATCGCCGTCGCCGTAGATCAAGCCTCTTTGATATCACTACCGATACGGTTAAAGCAACGTCAATGGAAGAGGAGCAAGCACAGTATCAAGATAAATACACTCAATTACATTCCCATTCCGGATCGTACAATGTGAACGGATATCCAAATCTGCCAACTTTTCCAACTTTTATTGCTCCAGCATCAATTTTTCCGCCATTGCAGATTGAAAATCCCATGGAAAAGCTAACACTTGCACAAGGAAACCTAGAAACTGATGCTGCATCTTCTTCGGAACTTATCCGTCGTCCAGTTGCTGTTCAAACCGTTCCTCATTCTACGACCATGGATGAGCTTAACTCGAATTTGGAAAGCTCAAAAATGGAGGACCCAACATCTCTATCTCTGAACCTTTCCTTGCAAATGGACTCATCATCATCACTGTCCAGACAATCTAAAAACCCTGCTTTTCAGCCAATGTCAAGGTCAAGCTTCAGCAATGGTGATAGCATTATCAGTGTTGCTTAA 972 46.19 MSSTAAVTDSTVTGGGFANAIILFGVRVVVDSMRKSVSLNNLSQYEHHRDHSDNNDDKSKTCNKISSVDVDHKDDVAAAGYASADDVVPNSGTNHQRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVKATSMEEEQAQYQDKYTQLHSHSGSYNVNGYPNLPTFPTFIAPASIFPPLQIENPMEKLTLAQGNLETDAASSSELIRRPVAVQTVPHSTTMDELNSNLESSKMEDPTSLSLNLSLQMDSSSSLSRQSKNPAFQPMSRSSFSNGDSIISVA 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 757302 759112 + Conep16aG0013500.1 Cone16ag0133 454567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0133 323 PANTHER TRANSCRIPTION FACTOR KUA1 19 253 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Cone16ag0133 323 FunFam transcription factor MYB1R1 103 154 - -
Cone16ag0133 323 SUPERFAMILY Homeodomain-like 99 154 IPR009057 -
Cone16ag0133 323 ProSiteProfiles SANT domain profile. 100 153 IPR017884 -
Cone16ag0133 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 100 151 IPR006447 GO:0003677(InterPro)
Cone16ag0133 323 CDD SANT 104 149 IPR001005 -
Cone16ag0133 323 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
Cone16ag0133 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 153 IPR017930 -
Cone16ag0133 323 SMART sant 101 151 IPR001005 -
Cone16ag0133 323 Gene3D - 103 155 - -
Cone16ag0133 323 MobiDBLite consensus disorder prediction 290 323 - -
Cone16ag0133 323 MobiDBLite consensus disorder prediction 81 103 - -
Cone16ag0133 323 Pfam Myb-like DNA-binding domain 103 149 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0133 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0133 Cone-Chr16:757302 Cone8ag0416 Cone-Chr8:2573507 3.00E-45 dispersed
Cone13ag0104 Cone-Chr13:647998 Cone16ag0133 Cone-Chr16:757302 5.50E-75 wgd
Cone16ag0133 Cone-Chr16:757302 Cone19ag0111 Cone-Chr19:620257 2.07E-89 wgd
Cone16ag0133 Cone-Chr16:757302 Cone2ag0877 Cone-Chr2:34685865 8.48E-186 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone16ag0133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44922 PF02670 DXP_reductoisom 1.20E-47 CL0063 Cone TF