Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0141 ATGTTAAGGGCAAAGCAAATCAGCAGCTTGTCACACAGTGCTCGTTCCTTTTTCATACCTGGGTCCCGCTACAATCCAGATGATGGAAGTTCTTGCATTTCTACATCTGAAGATGAAACGCATATTCCAGAAAAAAGGCCTTTCATTTCAGGACCAAAAAGTTTGGCAAATTTTCGGACAGTTTCACATTCGGGAAAGGCATCAGAAGGAGTATCCAGGTCCACTTCTTCTATTCAGGAAGATGTAGTAATCCAAGCTTCTCCCGCTTTAGCTGAAAAGCTTGTTATGGCCGGTATAACTACTGTGAATATCATTTCCGATTTGGTCAACTATAAGGTCCCTATATCATCAAGTGGGAATGGAGTAATAGTCAACTCGTCCAAGAACTGTGTGATAGATTCCAGCCATCCGGTTTCAAGCATCAAGTCATCTCATGTAAAACCGATAAAGAGAGAGAACAATTCTGGCCTTCACCCCAACAAACCAGCTTCAGAAGCAGCTTTGAGTTCAAAAACGAAAAGTAATCACTATCAAGGTATTAAGACAAAAGAGAATACTACACCACTACAAAGACCAAAACCTCATGTTGGAAATACAGAACATGTGGTGGAAAATGTTTCTTGGATTCTAAGACAGTCTAACTGGGGCCGAGCTACAAAAGAGACTCTTAAAAACCTGAATTTTTCAATGGATGCTTTTCATGCGAATCAAATCCTGAAGCAACTACAGGACTACTCTGTTGCGCTTGGGTTTTTTGGTTGGTTGAAACAGAAACCGGGATTTAGACATGACGAGCATACGTACACGACTATGGTTGGAATCTTGGGTCGTAACAAACAATTTGGGGAAATTACCAAATTGGTCGGGGAAATGCTCAATGATGGGTTGCACCCGAATGTCGTGACGTATAACCGGATCATTCACAGTTATGGCCGGGCTAACTACTTGAAAGAAGCGGTTAATGTTTTTAACCGAATGCGGTTAGAGAAAATCGAACCAGACCGAGTCACTTATTGCACACTAATCGATATTCACGCAAAAGCCGGGTTTCTTGATACTGCCATGAGCATGTACGGGAAGATGCAAGAGGCGGGTCTTAGTCCAGACACGTTTACGTATAGTGTTATAATCAACTGTCTCGGAAAAGCCGGCCATTTGACCACGGCTTACAAGATTTTCCGGCAAATGGTGGAACATGGTTGTGTTCCGAATCTTGTCACTTATAACATCATGATCGATCTACAGGCAAAAGCCAGGAATTATCATATCGCTTTGAAGATTTTTGATGATATGCAAAGTGCCGGTTTTCAACCCGATAAAGTGACGTACAATATAGTAATGGAAGTGCTTGGGCATTGCGGTTATCTTATAGAGGCAGAAGCTCTTTTTTTCGAGATGCAGCAGAAGAACTGGGTCCCGGACGAATACGTTTACGGGATTTTAGTCGATTTGTGGGGAAAATCAGGTAATGCTGAGAAGGCTTGGGAATGGTATCGAACCATGATTGATTATGGTTTGAGGCCTAATGCTCCGATTTGCAACTCCTTGCTTAGTGCTTTCCTTCGGGTTCACCGGCTTTTTGATGCACATAACTTGGTTCGGGATATGGTTGCTTTTGGTATAAGCCCGTCTAGTCAAACATACACTTTACTCCTCAGCTGTTGTTCTGACACAAAGTCACTATACCACATGGGCTTTTGCCATGAACTCATGAAGATATCAGGCCACCCAGCCCACGAATTTCTCACAACCATGCCGTCGTCCGGCCCAAACGGTCAAAATGTTAGGGATCATACTACCAAGTTTCTTGATATGATGATGTATAGTGAAGATAGAGAGAGCAAGAGAGGACTTTTCGACGCAATGGTGGATTTTCTTTACAAGTTGGGTCTCAAGGAAGAGGCAGGGTCTGTCTGGGAGGTGGCGGCTCAGAAGAGCATATATCCCGAGGCTGTGAGACAGAAAGGCTCGTCATATTGGCTTATCAACCTTCATGTTATGTCTGATGGGACAGCTGTCATAGCCTTATCCCGAACGCTCGCTTGGTTTCGTCAACAGATGCTAAGTTGTGGGACCACTCCGAGCCGAATTGATATTGTGACGGGCTGGGGCCGGAGGAGCCGGGTTACGGGATCATCTTTGGTTCGGCAAGCTGTGGAGAAGCTTTTGGATGTTTTTGGGTTTCCATTTTTTACCCAAAATGGGAATTCGGGTTGTTTTGTTAGCTGTGGAGAGCCGCTTAGCCAATGGTTGCTCCAGTCATATGTAGAGCGTATGCATTTACTATGA 2289 43.95 MLRAKQISSLSHSARSFFIPGSRYNPDDGSSCISTSEDETHIPEKRPFISGPKSLANFRTVSHSGKASEGVSRSTSSIQEDVVIQASPALAEKLVMAGITTVNIISDLVNYKVPISSSGNGVIVNSSKNCVIDSSHPVSSIKSSHVKPIKRENNSGLHPNKPASEAALSSKTKSNHYQGIKTKENTTPLQRPKPHVGNTEHVVENVSWILRQSNWGRATKETLKNLNFSMDAFHANQILKQLQDYSVALGFFGWLKQKPGFRHDEHTYTTMVGILGRNKQFGEITKLVGEMLNDGLHPNVVTYNRIIHSYGRANYLKEAVNVFNRMRLEKIEPDRVTYCTLIDIHAKAGFLDTAMSMYGKMQEAGLSPDTFTYSVIINCLGKAGHLTTAYKIFRQMVEHGCVPNLVTYNIMIDLQAKARNYHIALKIFDDMQSAGFQPDKVTYNIVMEVLGHCGYLIEAEALFFEMQQKNWVPDEYVYGILVDLWGKSGNAEKAWEWYRTMIDYGLRPNAPICNSLLSAFLRVHRLFDAHNLVRDMVAFGISPSSQTYTLLLSCCSDTKSLYHMGFCHELMKISGHPAHEFLTTMPSSGPNGQNVRDHTTKFLDMMMYSEDRESKRGLFDAMVDFLYKLGLKEEAGSVWEVAAQKSIYPEAVRQKGSSYWLINLHVMSDGTAVIALSRTLAWFRQQMLSCGTTPSRIDIVTGWGRRSRVTGSSLVRQAVEKLLDVFGFPFFTQNGNSGCFVSCGEPLSQWLLQSYVERMHLL 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 803408 806430 - Conep16aG0014300.1 Cone16ag0141 454575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0141 762 MobiDBLite consensus disorder prediction 27 48 - -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Smr domain profile. 662 743 IPR002625 -
Cone16ag0141 762 Pfam PPR repeat 267 296 IPR002885 -
Cone16ag0141 762 Pfam PPR repeat 477 506 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Cone16ag0141 762 MobiDBLite consensus disorder prediction 157 193 - -
Cone16ag0141 762 Gene3D - 639 742 IPR036063 -
Cone16ag0141 762 Pfam PPR repeat 365 397 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Cone16ag0141 762 PANTHER OS03G0856100 PROTEIN 65 757 - -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Cone16ag0141 762 Pfam PPR repeat family 298 346 IPR002885 -
Cone16ag0141 762 Pfam PPR repeat family 403 450 IPR002885 -
Cone16ag0141 762 Pfam PPR repeat family 508 556 IPR002885 -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Cone16ag0141 762 MobiDBLite consensus disorder prediction 135 196 - -
Cone16ag0141 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 298 IPR002885 -
Cone16ag0141 762 SUPERFAMILY SMR domain-like 660 741 IPR036063 -
Cone16ag0141 762 Gene3D Tetratricopeptide repeat domain 203 345 IPR011990 GO:0005515(InterPro)
Cone16ag0141 762 Gene3D Tetratricopeptide repeat domain 346 500 IPR011990 GO:0005515(InterPro)
Cone16ag0141 762 SMART SMR_2 659 745 IPR002625 -
Cone16ag0141 762 Gene3D Tetratricopeptide repeat domain 501 571 IPR011990 GO:0005515(InterPro)
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 336 370 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 406 439 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 441 475 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 371 404 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 476 510 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 301 334 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 512 544 IPR002885 -
Cone16ag0141 762 NCBIfam pentatricopeptide repeat 266 300 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0141 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0093 Cone-Chr13:571071 Cone16ag0141 Cone-Chr16:803408 3.42E-140 wgd
Cone16ag0141 Cone-Chr16:803408 Cone19ag0096 Cone-Chr19:543865 2.35E-46 wgd
Cone16ag0141 Cone-Chr16:803408 Cone2ag0866 Cone-Chr2:34620480 6.54E-271 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33