Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone16ag0149 | ATGCAAAGAGGAGCTAACGTTCACATTTCTAATGGGGCTCAAATAACTTTGCAATTTGTGACGAATGTGATCATCATCCATGGGCTTCATATCTATGATACAAAGGCAGGGAATGGTGATCTTGTTAAGGATTCAATTAGCCATTTGGGATTAGGACTAGCAGTGATGAATTGTCAAGATGGAATTATCGATGCCGTCATGGGCTCTACCGGAATTACCGTCTCCAATTGTCACATGACTGACCACAATGAGGTAATGTTGTTCAGTGATACCTACTCTGGGGACGAAACATTAGCATTTAACAATTTCGGGAAGAGATTAGTGCAAAGAATCCCAAGGTGTAGATGGGGATTTGTTCATGTAGTCAACAATGACTATACCCATTGGCTCAAGTATGCAATTGGTGGTAGCTCTCATCCCACCATTCTTAGCCAAGGCAACCGGTTCATTACTCCACCCCACTTCAATCTCAAACAGTTATCACATGGAGATTACGCACCAGAGAGTGGAAAATTTGAAATTGGAGATCAGATGATGAATGGAGCATTCTTCAAGGAATCTGGAAACAAAGTCACTGAAGTTCATAAAAAGGGACGCGATAAAGGCGAAGTCCGGGAAATTCGTGACCAGGCTTACGCGCTTTGCATAAAAGGCCTTCCTTGA | 663 | 42.53 | MQRGANVHISNGAQITLQFVTNVIIIHGLHIYDTKAGNGDLVKDSISHLGLGLAVMNCQDGIIDAVMGSTGITVSNCHMTDHNEVMLFSDTYSGDETLAFNNFGKRLVQRIPRCRWGFVHVVNNDYTHWLKYAIGGSSHPTILSQGNRFITPPHFNLKQLSHGDYAPESGKFEIGDQMMNGAFFKESGNKVTEVHKKGRDKGEVREIRDQAYALCIKGLP | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 863116 | 864115 | - | Conep16aG0015200.1 | Cone16ag0149 | 454583 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone16ag0149 | 220 | PANTHER | PECTATE LYASE 18-RELATED | 3 | 50 | IPR045032 | GO:0030570(InterPro) | |
| Cone16ag0149 | 220 | Pfam | Pectate lyase | 59 | 149 | IPR002022 | - | |
| Cone16ag0149 | 220 | Gene3D | - | 1 | 215 | IPR012334 | - | |
| Cone16ag0149 | 220 | SMART | amb_all | 3 | 155 | IPR002022 | - | |
| Cone16ag0149 | 220 | SUPERFAMILY | Pectin lyase-like | 4 | 188 | IPR011050 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone16ag0149 | Cone-Chr16:863116 | Cone17ag1110 | Cone-Chr17:8246004 | 1.02E-62 | dispersed | |
| Cone16ag0149 | Cone-Chr16:863116 | Cone16ag0872 | Cone-Chr16:9183557 | 4.79E-18 | wgd | |
| Cone16ag0149 | Cone-Chr16:863116 | Cone18ag1333 | Cone-Chr18:9223112 | 3.37E-75 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone16ag0149 | K01728 | - | csv:101218812 | 249.98 |