Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0154 ATGGGGAAATCACCCGGAAAATGGATCAAAACCGTTTTGTTTGGAAAAAAGAACTCCAAGTCCCATATGCCCAAAGGAAGGGAGAAAATTGGAAACGAGAAAGCGGTGTTGGTATCTGCCAAGGGATCAGAAGCTGATGCAGGTGTGGATTTTCCGGATGCTTCAAATCTGATTCCAAAAAGTGTTGAAAGAAATGAAGGAAGGTCAGAAATTAACAGCAAAAAAACTGAAAATATATCGCCTGATGGGAATATATCTTTCCTTGGAAATCAATATACAGAGACACAAGGGTCTACAAATGCACCGTATGATCCGGAAAGACTCAAGCTGGAGCAAGCTGCGACTAAGGCTCAGGCTGCTTTTCGGGGTTATTTGGCTCGTCGAGCATTTTGGGCCCTGAAAGGGATTATAAGGCTGCAAGCTCTTATTCGTGGACACTTGGTCCGGAGACAAGCTGTTGCTACTCTTAGCTCTATGCTTGGGATTGTCAAGTTTCAGGCTCTTGTTCGTGGGAGAATTGTTAGGCATTCTGATATTGGGCTTGCAGTGGGAAACAAATGCAGTCTTCCTAAGGAATATGTAATAGTGGACCCTGCTGGATTTAGTCTCTCTACGAGGATGGCAAGGTTTACAGCAAATGCTTACATTTTCAAGCTTCTTGCTACACCTCCTTCTGTAAAACCTCTGCACCTCCATTTCGATCCTGAGGACCAGAACTCAGTCTCGAGCTGGTTAGAACGCTGGTCCAGGTCCCACTTTTGGCAACCAATTCCTCAACCGAAAAAGCAAAAAGAGTCCTCCAAGTCTCAAAGAAAGCCAAGCAATGGTCAAACCATTGACCCACATGTCGGCCGGTCAAAGCGCACAAGAAGACTCCCTGTCACAAACACTGACAATGCCTCCACCCTTCCATCATCTGAAGTCGAGAAACCCAAAAGAAATATCCGGAAAGTTCCAAGCCACCCTCCTTCTGATCTGGTTCCTGAAAACCCACAAAACGAACTCGAAAAAGTTAAACGAAGCTTGAGAAAGGTCCATAATCCTGTCCTTATTGAAAATCCTGTCCAAACCGAACCTGAACCCAAAAAGCCAAAGGAGATTTTTTTGTCAGGTCATAATAATCCTCTTTCCGAACCAGAGATCAGGGAGGAGGAGGAAGAGACTCTAGTGATAATGTCATCTAATTCTTCTGATAATAAAGAACTGGCCCTTGAATCACTACACGTGAAAGAAGTCCTGGATGAAGTTACCTTAAATCCAAACCCTTTAACAAGTAATCCAAAAGATGAAGCTGTTGAAGTTGAGCCGAAGAATCAACCAGAGGATGATTACAAAGATGAAAATAGCCCTTTAACAAACGGGAAATTGATCCAGAAAGAGAACCCAATGAGCAATGAGAATTTGAAATCGAGCAGGAAAAATAGTCTGAATTTGCCAAGTTATATGGCTGCTACTGAATCGGCTAAGGCTAAGCTAAGGGCACAAGGGTCCCCTAGATTTGGACAAGAAGTTGAGAAGAATAATAATAGTACTGTTAGACGCCATTCTCTGCCTTCTTTGACTAATAATGGGAAGATCAGCTCACAGTCGCCTATAACTCAGAGAGTTGCTCAATCTGGTGGAAAAGGCGGGATTAAAAGTGATAAGTCTGTTCCTGCTCCCAAAGAAGGACTTGATGTTTACATCTTTGGGGAGTTTCATGCGGGCAAGGCTTATATTCCACAGGTTTGA 1731 43.44 MGKSPGKWIKTVLFGKKNSKSHMPKGREKIGNEKAVLVSAKGSEADAGVDFPDASNLIPKSVERNEGRSEINSKKTENISPDGNISFLGNQYTETQGSTNAPYDPERLKLEQAATKAQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLSSMLGIVKFQALVRGRIVRHSDIGLAVGNKCSLPKEYVIVDPAGFSLSTRMARFTANAYIFKLLATPPSVKPLHLHFDPEDQNSVSSWLERWSRSHFWQPIPQPKKQKESSKSQRKPSNGQTIDPHVGRSKRTRRLPVTNTDNASTLPSSEVEKPKRNIRKVPSHPPSDLVPENPQNELEKVKRSLRKVHNPVLIENPVQTEPEPKKPKEIFLSGHNNPLSEPEIREEEEETLVIMSSNSSDNKELALESLHVKEVLDEVTLNPNPLTSNPKDEAVEVEPKNQPEDDYKDENSPLTNGKLIQKENPMSNENLKSSRKNSLNLPSYMAATESAKAKLRAQGSPRFGQEVEKNNNSTVRRHSLPSLTNNGKISSQSPITQRVAQSGGKGGIKSDKSVPAPKEGLDVYIFGEFHAGKAYIPQV 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 896314 901793 + Conep16aG0015800.1 Cone16ag0154 454588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0154 576 Gene3D - 108 159 - -
Cone16ag0154 576 SMART iq_5 109 131 IPR000048 GO:0005515(InterPro)
Cone16ag0154 576 SMART iq_5 132 153 IPR000048 GO:0005515(InterPro)
Cone16ag0154 576 ProSiteProfiles IQ motif profile. 134 161 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 487 553 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 355 398 - -
Cone16ag0154 576 PANTHER IQ-DOMAIN 5-RELATED 6 509 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 415 475 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 293 308 - -
Cone16ag0154 576 ProSiteProfiles IQ motif profile. 110 138 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 255 331 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 451 475 - -
Cone16ag0154 576 Pfam Protein of unknown function (DUF4005) 461 546 IPR025064 -
Cone16ag0154 576 Pfam IQ calmodulin-binding motif 112 130 IPR000048 GO:0005515(InterPro)
Cone16ag0154 576 Pfam IQ calmodulin-binding motif 134 151 IPR000048 GO:0005515(InterPro)
Cone16ag0154 576 MobiDBLite consensus disorder prediction 501 537 - -
Cone16ag0154 576 MobiDBLite consensus disorder prediction 430 449 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0154 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0154 Cone-Chr16:896314 Cone20ag0275 Cone-Chr20:1221713 1.61E-11 dispersed
Cone16ag0154 Cone-Chr16:896314 Cone2ag0858 Cone-Chr2:34555900 6.50e-313 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34