Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0155 ATGGTGTTGGTTTTAGCATTGGGGGATTTACATATACCTCACAGGGCAGCTGATTTGCCTGCTAAGTTCAAGTCCATGCTTGTTCCTGGAAAGATCCAGCACATCATTTGCACTGGAAATCTTTGTATCAAAGAAGTTCATGATTATTTGAAGACCATCTGCACTGATTTGCACATAGCTCGGGGCGAATATGATGAAGAGATGAAGTACCCAGAGACTAAAACATTGACTATTGGGCAATTTAAGCTCGGACTATGCCATGGCCATCAGGTTATTCCATGGGGTGACCTTGACTCATTAGCCATGCTTCAAAGGCAATTGGACGTAGATATCCTTGTGACGGGTCATACCCATCAGTTCACAGCTTATAAACATGAGGGTGGAGTTGTAATTAACCCGGGATCTGCTACCGGGTCCTACAGCAGCATAACCTACGATGTGAACCCGAGCTTTGTCCTCATGGACATTGATGGACTCAGAGTTGTAGTCTATGTCTACGAACTCATTGATGGAGAGGTCAAAGTGGACAAGATCGACTTCAAGAAAACTACTACCAATACTCACTCCGCGCATTAA 576 44.27 MVLVLALGDLHIPHRAADLPAKFKSMLVPGKIQHIICTGNLCIKEVHDYLKTICTDLHIARGEYDEEMKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAMLQRQLDVDILVTGHTHQFTAYKHEGGVVINPGSATGSYSSITYDVNPSFVLMDIDGLRVVVYVYELIDGEVKVDKIDFKKTTTNTHSAH 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 901913 904210 - Conep16aG0015900.1 Cone16ag0155 454589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0155 191 Pfam Calcineurin-like phosphoesterase superfamily domain 4 157 IPR024654 -
Cone16ag0155 191 Gene3D - 1 182 IPR029052 -
Cone16ag0155 191 NCBIfam YfcE family phosphodiesterase 3 157 IPR000979 -
Cone16ag0155 191 PANTHER VACUOLAR SORTING PROTEIN VPS29 2 183 IPR000979 GO:0005768(PANTHER)|GO:0006886(PANTHER)|GO:0030904(PANTHER)|GO:0042147(PANTHER)
Cone16ag0155 191 FunFam Vacuolar protein sorting-associated protein 29 1 182 - -
Cone16ag0155 191 SUPERFAMILY Metallo-dependent phosphatases 1 181 IPR029052 -
Cone16ag0155 191 CDD MPP_Vps29 3 180 IPR028661 GO:0030904(InterPro)|GO:0042147(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0155 K18467 - - mdm:103447852 378.252
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0155 Cone-Chr16:901913 Cone2ag0856 Cone-Chr2:34552522 2.19E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g873 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0856 Cone16ag0155 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006547 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38