Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0175 ATGGCCACCGTGACAACTCAAGCTTCAGCCGCTATATTTCGGCCATGCACCCAAAAAACCCGGTTCCTCACTGGGTCTTCTGTTAAACTCACCAGAGCTTTGTCCGTTAAGTCAATGTCATCTTTTTCTTCTACAACTTCCTTCAAAGTTGAGGCCAAGAAAGGAGAGTGGTTGCCCGGTTTAGCCTCACCAAACTACCTCAACGGCAGTCTTCCAGGTGACAATGGGTTTGACCCTCTTGGGTTAGCAGAGGACCCAGAGAACTTGAAGTGGTTCGTGCAAGCAGAACTCGTGAATGGAAGATGGGCGATGCTCGGAGTAGCAGGGATGCTTCTTCCAGAAGTATTCACAAGCATCGGAATTCTGAACGTACCGAAATGGTATGATGCCGGGAAAGCAGAGTACTTTGCATCATCATCTACACTTTTAGTGATCGAGTTCATCTTGTTCCACTACGTCGAGATCAGACGGTGGCAAGATATTAAGAACCCGGGAAGTGTTAATCAAGACCCAATTTTCAAGCAATACAGTTTGCCCCCGAATGAAGTTGGATACCCTGGTGGCATTTTCAACCCTCTCAACTTTGCACCCACTCCTGAAGCTAAAGAGAAGGAAATTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATAATTCAGCACAATGTTACTGGAAAAGGACCATTTGACAACTTGTTGCAGCACCTGTCGGACCCATGGCACAACACCATTGTTCAAACACTAAGCAGGTAA 759 46.51 MATVTTQASAAIFRPCTQKTRFLTGSSVKLTRALSVKSMSSFSSTTSFKVEAKKGEWLPGLASPNYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKAEYFASSSTLLVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTPEAKEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHLSDPWHNTIVQTLSR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1117713 1119547 - Conep16aG0017900.1 Cone16ag0175 454609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0175 252 Pfam Chlorophyll A-B binding protein 64 223 IPR022796 -
Cone16ag0175 252 Gene3D Chlorophyll a/b binding protein domain 64 243 - -
Cone16ag0175 252 SUPERFAMILY Chlorophyll a-b binding protein 54 250 - -
Cone16ag0175 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 25 246 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cone16ag0175 252 FunFam Chlorophyll a-b binding protein, chloroplastic 64 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0175 Cone-Chr16:1117713 Cone8ag0754 Cone-Chr8:7634588 1.10E-74 dispersed
Cone16ag0175 Cone-Chr16:1117713 Cone2ag0840 Cone-Chr2:34403965 1.06E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0175 K08910 - sly:101268669 459.144