Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0184 ATGGAGGGGAAGGAGCTGAATTTAAACAAAGATCCAGGTGGTGGGTATAACAACAGTAAGAGTGGAGGGGATGGGTTTATAGATAGGAGCAAGGTGAAGATTTTGCTGTGTGATAATGATTCCAAGAGTTCTGAAGAGGTTTTCACACTGCTTTTGAAATGTTCTTATCAGGTGATCTCAGTGAAGTCAGCAAGACAAGTAATTGATGCATTGAATGCGGAGGGGCCTGATATAGACATCATACTTGCGGAAGTAGACTTACCAAAGGCCAAAGGCATGAAAATGTTGAAGTACATAACTCGTGATAAAGACCTCCGGAGAATTCCTGTGATTATGATGTCAACACAAGATGAGGTCTCTATTGTCGTCAAGTGCTTGCGGCTTGGAGCCGCAGATTATCTTGTGAAGCCTTTGCGAACCAATGAGCTACTCAACCTGTGGACCCACATGTGGAGAAGAAGACACATGCTTGGCCTGACGGAGAAGAAAATATTAAACTATGACTTAGACGTGGTAGTCTCTGATCCTAGTGATGCCAATACAAACAGCACTACTTTGCTCTCAGATGACACAGACGACAAGTCTCGTAGGGCCACCAATCCGGAAATTGGAATATCAACCAACCTGGAGGAAGAGCTTGTTAATGGTATGGTTACAGTTGCAGCAGAGCCTCTAGTCATTGATTTATCAGAATGTCGGCCTAATGTGCCTGGAATTAGTGATCGCCGTACTGGACAACTCTCATGTGGACCAAAAAAGAGTGAGCTAAAGATCGGGGAATCCTCGGCCTTCTTCACCTACGTCAAAGCAAGCACGCTTAAAAAGAACTCCATCCAAGTACAAGACAATGGGCCCACTAAAGATCATTCAAGGATAGAGTCCACTCAGCATCATTCATCCAAGCAACAGGCAGCAAACAATTCAGAACAACAACAACAATTACAAGAAAACCCCGAAGCATGGGATATCTACTCACAAGGAGAAGATCTCCCAAGCAGTTCTAGTCTCCCTGATTCTCTTTCCATGGAAAGATCTTGCACCCCACCAACAACTGAAGAGAAATTTACTCCAGGACCCACTGCCACCTCCATGCATCCTCCGACTGGGCGCACACAACCCGCTTACCCATTTCACATGCCGGGTGTCATGAACCCATTAATGGTCCCACCACAATACAGTCATCACCATCTCCATCATTACCCTCATGGTATAACCCAAATGACCCATTTCCCATTTTACTCTCCTATGTTACAACAACCCAGTCAGATGCCTAATAATCATCATCCTCATCATCCTCATAATCTATGGCCATCTTTTGGAAGCTCATCATCTGGTGAAGTGAAAGTAAACAAAGTGGATAGAAGAGAGGCGGCTTTGATGAAGTTCAGGCAGAAGAGAAAAGAGCGCTGCTTTGATAAGAAGATAAGGTATGTTAATAGGAAAAGGTTGGCCGAAAGGAGGCCTAGGGTCCGGGGCCAGTTTGTGAGAAAGGTGAATGGTGTGAACGTAGATCTTAATGGTCAACCTGCTTCTGCTGATGAAGAAGATGAGGATGATGATGAGGAATCTCGAGGATGA 1578 44.74 MEGKELNLNKDPGGGYNNSKSGGDGFIDRSKVKILLCDNDSKSSEEVFTLLLKCSYQVISVKSARQVIDALNAEGPDIDIILAEVDLPKAKGMKMLKYITRDKDLRRIPVIMMSTQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRHMLGLTEKKILNYDLDVVVSDPSDANTNSTTLLSDDTDDKSRRATNPEIGISTNLEEELVNGMVTVAAEPLVIDLSECRPNVPGISDRRTGQLSCGPKKSELKIGESSAFFTYVKASTLKKNSIQVQDNGPTKDHSRIESTQHHSSKQQAANNSEQQQQLQENPEAWDIYSQGEDLPSSSSLPDSLSMERSCTPPTTEEKFTPGPTATSMHPPTGRTQPAYPFHMPGVMNPLMVPPQYSHHHLHHYPHGITQMTHFPFYSPMLQQPSQMPNNHHPHHPHNLWPSFGSSSSGEVKVNKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKVNGVNVDLNGQPASADEEDEDDDEESRG 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1189286 1193391 + Conep16aG0018800.1 Cone16ag0184 454618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0184 525 MobiDBLite consensus disorder prediction 327 369 - -
Cone16ag0184 525 SUPERFAMILY CheY-like 29 157 IPR011006 -
Cone16ag0184 525 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160(InterPro)
Cone16ag0184 525 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 249 IPR045279 GO:0009736(InterPro)
Cone16ag0184 525 Pfam CCT motif 455 497 IPR010402 GO:0005515(InterPro)
Cone16ag0184 525 MobiDBLite consensus disorder prediction 180 200 - -
Cone16ag0184 525 MobiDBLite consensus disorder prediction 1 22 - -
Cone16ag0184 525 MobiDBLite consensus disorder prediction 234 253 - -
Cone16ag0184 525 MobiDBLite consensus disorder prediction 510 525 - -
Cone16ag0184 525 ProSiteProfiles CCT domain profile. 455 497 IPR010402 GO:0005515(InterPro)
Cone16ag0184 525 MobiDBLite consensus disorder prediction 501 525 - -
Cone16ag0184 525 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160(InterPro)
Cone16ag0184 525 MobiDBLite consensus disorder prediction 297 320 - -
Cone16ag0184 525 SMART REC_2 32 147 IPR001789 GO:0000160(InterPro)
Cone16ag0184 525 MobiDBLite consensus disorder prediction 278 375 - -
Cone16ag0184 525 Gene3D - 32 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0184 Cone-Chr16:1189286 Cone1ag1021 Cone-Chr1:55118294 3.09E-28 dispersed
Cone10ag0269 Cone-Chr10:1282359 Cone16ag0184 Cone-Chr16:1189286 3.59E-09 wgd
Cone16ag0184 Cone-Chr16:1189286 Cone2ag0830 Cone-Chr2:34314094 8.11e-312 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44928 PF07995 GSDH 1.60E-22 CL0186 Cone TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0184 K12127 - cit:102626186 588.956