Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0186 ATGTCCGCTGCCCAATCTTCCTCTTCTTGCGCCGGTCTTTCCACGGACCCATATGAAGATATCGACGATTACATTTGGGAAAATGAAGGAAATGGGTCATTGCCATGGGATGCATATAGTCATGTTTATGATCTTGTGCAGGATGGAAACTCTTGTTTTCGAGATAATCAATTTGAAAAGGCAATCGACTATTACTCAAGAGCCAACAGCATCAAACCAGGTGATCCCATTATACTTGGAAACAGAAGCACTACCTATATCAGGCTTAGTAGAAACTTAAAACACAGACCGGCTTCAGCTTCTGAACAAAGACCGCTAAATGGATTAGATCCAACAATACATGCTGAACTGTCTCTAAAGGATGCTGATAAACTAATGGAACTCCAGAACACTTCAGTGAAGCCGTACATTCTAAAGGCCAATGCTCTTGTTCTGGTGGAGAAGTATGAAATGGCCTGGGACGTAATCCTTTCAGGCCTTGAAATCGACCCTTCAAGCAATCCTCTTCAGGCTTCTCTTCAGAGTTTAGAGAAAAGACCAGCCAGTGTGGTGGAGAGGAGAAGAAGCCAAGTCAAACTTGAACTTACTGATGATTTTGTTTGCATCCTCTGCCTTAAACTATTATATGAACCCGTTACAACTCCTTGTGGCCACTCCTTTTGCCGTTCATGCCTTTTCCAATCAATGGATCATGGTAATAACAAATGTCCGTTATGCCGATCAGTTCTTTTTATTAGTCCACGAACATGTGCTACAAGCGTAAGCCTGAACAGCATTATAACAAAGAACTTTCCGGAAGAATATATGGAAAGGAAGTTAGAGCATGAAGGTTTATCAAATCTTCGTGTTGATTTGATGCCTCTTTTCGCCATGGACGTTGTCTTACCATGTCAGAAGTTTCCTCTCCGAATTTTCGAACCTCGGTATAGACTAATGGTGAGACGAATAATGGAAGGAAATCGTCGCATGGGAATGGTGAGACGTGATTCTATAACAGGTTCAGTAGCTGATTTTGGCTGTGAAGTAGAAATCACAGAGTGTGAGCCTCTTCCTGATGGGCGCTTTTTTATCGAGATTGAAAGTCAAAGGAGATTTCGGATTCTTCGATCTTGGGATCAAGATGGTTATCATGTGGCAGAGATTGATTGGTTTGAGGATATATATCCGCTTATCGGGACACAAGAAAGGGAAAATTTGCAGAAGCTGACTAATGATGTTGTGGAATATGCTCAATTATGGTTAAGGAGAAAAAAAGCAGCTGCTCGAGGAGAGCCAAGACGGCTTGAGAAACTTCTTATCACAGAAATGATGATGCCTTCATTACAAGATCCCGAGCGTTTTAGTTTCTGGGTTGCCAACCTATCGAATCGTGGGCCCGAGGAAAGATTAGAGCTCCTACGCATAAGAGATACCGTAGAGAGGATGAAGCGTGTAGTTGCATATCTCCGACAGGAACAATAG 1461 42.44 MSAAQSSSSCAGLSTDPYEDIDDYIWENEGNGSLPWDAYSHVYDLVQDGNSCFRDNQFEKAIDYYSRANSIKPGDPIILGNRSTTYIRLSRNLKHRPASASEQRPLNGLDPTIHAELSLKDADKLMELQNTSVKPYILKANALVLVEKYEMAWDVILSGLEIDPSSNPLQASLQSLEKRPASVVERRRSQVKLELTDDFVCILCLKLLYEPVTTPCGHSFCRSCLFQSMDHGNNKCPLCRSVLFISPRTCATSVSLNSIITKNFPEEYMERKLEHEGLSNLRVDLMPLFAMDVVLPCQKFPLRIFEPRYRLMVRRIMEGNRRMGMVRRDSITGSVADFGCEVEITECEPLPDGRFFIEIESQRRFRILRSWDQDGYHVAEIDWFEDIYPLIGTQERENLQKLTNDVVEYAQLWLRRKKAAARGEPRRLEKLLITEMMMPSLQDPERFSFWVANLSNRGPEERLELLRIRDTVERMKRVVAYLRQEQ 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1198443 1201964 + Conep16aG0019000.1 Cone16ag0186 454620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0186 486 CDD RING-HC_LONFs_rpt2 198 243 - -
Cone16ag0186 486 ProSiteProfiles Lon N-terminal domain profile. 283 486 IPR003111 -
Cone16ag0186 486 PANTHER RING FINGER PROTEIN 127 39 484 - GO:0061630(PANTHER)
Cone16ag0186 486 ProSitePatterns Zinc finger RING-type signature. 216 225 IPR017907 -
Cone16ag0186 486 SMART lon_5 285 484 IPR003111 -
Cone16ag0186 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 286 483 IPR003111 -
Cone16ag0186 486 SMART ring_2 201 239 IPR001841 -
Cone16ag0186 486 Gene3D - 284 385 IPR046336 -
Cone16ag0186 486 Gene3D Tetratricopeptide repeat domain 38 190 IPR011990 GO:0005515(InterPro)
Cone16ag0186 486 ProSiteProfiles Zinc finger RING-type profile. 201 240 IPR001841 -
Cone16ag0186 486 SUPERFAMILY PUA domain-like 286 483 IPR015947 -
Cone16ag0186 486 SUPERFAMILY TPR-like 42 171 IPR011990 GO:0005515(InterPro)
Cone16ag0186 486 SUPERFAMILY RING/U-box 195 247 - -
Cone16ag0186 486 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515(InterPro)
Cone16ag0186 486 Gene3D - 425 484 - -
Cone16ag0186 486 Pfam Zinc finger, C3HC4 type (RING finger) 201 239 - -
Cone16ag0186 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 283 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0186 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0056 Cone-Chr13:347681 Cone16ag0186 Cone-Chr16:1198443 4.11E-228 wgd
Cone16ag0186 Cone-Chr16:1198443 Cone19ag0059 Cone-Chr19:373231 2.07E-231 wgd
Cone16ag0186 Cone-Chr16:1198443 Cone2ag0829 Cone-Chr2:34306656 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35