Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0190 ATGGGGTGCGTGAGCTCAAAGCAGGCGGTGTCTGTAACGCCTGCGTACGATCACTCTGGTGCGATTAGGGAAAACGGGTCGGGTTTGGGAAATTCGGGTCGGAACAGGGGAGGAGGAGGAGGGGAGGTGGTTGTGGTGGTGGAGGAGAAGAATGTGAAGGATAATAAGACAACGACCACGACGAAGATGAAGAAGAAGAAGAGTATCAAGGCGGAGACTGAGTTGGGAACTGGGTTTGGGACCGAGTTGGACGAGTCAGGGTGGGCCAGTTCGAATGGTGGGGGTGAATCGTTGAGCTTTAGATTGGGGAATTTGCAGAGGTACGTAGAAGGTGCACACGTGGCAGCTGGGTGGCCGGCTTGGCTCAGCGCCGTGGCTGGTGAAGCCATTCACGGTTGGGTTCCTCTTCAGTCTGATTCTTACGAGAAGTTAGACAAGATTGGGCAGGGTACATATAGCAGTGTGTTCCGAGCACGTGAGCTGGAAACAGGGAAGATAGTTGCTCTGAAGAAGGTTCGGTTCGACAATTTTGAGCCAGAAAGTGTTAGGTTCATGGCACGAGAGATAACGATTCTCCGCAAGCTAGACCACCATAATGTTATGAAATTGGAGGGCTTAATTACTTCAAGACTATCATGTAGTTTATACTTGGTCTTTGAGTACATGGACCATGACATTGCCGGGCTATTATCTTGCCCAAACATCAAGTTTACCGAATCACAAATCAAATGCTATATGAAGCAACTATTATCCGGACTTGAGCATTGTCATTCAAGAGGAGTAATGCATAGGGACATTAAAGGATCTAATCTTCTGGTCAATAATGAAGGGATTTTGAAGTTGGGTGATTTTGGATTGGCCAATTTCAGTAACTTGGGGCAAAGACAACCTCTAACTAGCCGGGTCGTCACTTTATGGTACCGTCCACCTGAGCTTTTACTGGGGTCCACAGAATATGGAGCAGCCGTCGATCTTTGGAGTGTTGGTTGTGTCTTTGCTGAGTTGCTAGTCGGCAGACCTATTCTTCAAGGGAGAACAGAGGTTGAACAGCTACACAAGATTTTCAAGCTCTGTGGTTCTCCTCCCGATGAATACTGGAAAAAAACCAAGTTTCCCCATGCAACTTTGTTCAGACCACAACATCCTTATGAAACTTGTCTTAGAGACACCTTTCGAGATTTCCCTACGGCAACTGTGGACCTTCTAGAAACTCTTCTTTCAGTCGAACCTTACAATCGTGGGACTGCCTCCTCTGCTCTTGCGTCCGAGTACTTCAGTACCAAGCCTTACGCCTGTGATCCATCAAGCATCCCCATATACCCACCCAGTAAAGAGATTGATGCGAAAAACAGAGAGGAAGCTAGAAGGAGCAGGAGTAAAATTAGTGGGAGGGTCCGGAGACCTGAATTAAGAAAGCCAACCCGAAAATCCCTTGGAAGCAATAAATTAGCACCCTCAGAGGAATTTTTGGTCCCAACTCAAAATTCTGACAAAATTAAATCCATCAATGCACAAATTCTCAAAGACGAAAAGCTCACTAAAGGTGGAGAGGCTTCATCAAAGCTATCAACTAATAATCTTGAAGATACCATCCATGTAAAGAATGCTTCTCAAGGAGACATTCCCTTTTCTGGTCTTTTACAAGTTTCAACTTCAAGCGGCTTTGCTTGGGCAAAAAGGCGAAGAGATTCATCTATAAGATCCCATAGTCGGTCTATTTCTAGAGGACTAATTAATCCAATAGAATTCTCTACTAGCTTGCAATCAAGGCATAAGGTGGACTCAAAAAGGCATGAAAATGGAGATATATGTGGTTTACGAACGGAATCTAGAGGCCGAGATTCCAATGAAAATGTCAAGGTTGGAATCCGGAATCAGTGGGGCAGGCTTGAGCAACCGGATTCATTTGATGCTTCTGATGGCTACCACTCATCAGAATTATCAATGGCTCTTTACATTCGAGAGGAAATGGAAGCTAAGAGAAACATGGGTTATCAAGATCCAGCGGACAAAGTTGAGTTTTCGGGTCCTTTATTATCTCAATCACACAGAGTGGATGAACTCTTAGATAGACACGAGCGACACATCAGACAGACAGTCCGTAGATCATGGTTTCATAAAGGTAAGAAGTATGGGAAGTAA 2142 45.24 MGCVSSKQAVSVTPAYDHSGAIRENGSGLGNSGRNRGGGGGEVVVVVEEKNVKDNKTTTTTKMKKKKSIKAETELGTGFGTELDESGWASSNGGGESLSFRLGNLQRYVEGAHVAAGWPAWLSAVAGEAIHGWVPLQSDSYEKLDKIGQGTYSSVFRARELETGKIVALKKVRFDNFEPESVRFMAREITILRKLDHHNVMKLEGLITSRLSCSLYLVFEYMDHDIAGLLSCPNIKFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKLGDFGLANFSNLGQRQPLTSRVVTLWYRPPELLLGSTEYGAAVDLWSVGCVFAELLVGRPILQGRTEVEQLHKIFKLCGSPPDEYWKKTKFPHATLFRPQHPYETCLRDTFRDFPTATVDLLETLLSVEPYNRGTASSALASEYFSTKPYACDPSSIPIYPPSKEIDAKNREEARRSRSKISGRVRRPELRKPTRKSLGSNKLAPSEEFLVPTQNSDKIKSINAQILKDEKLTKGGEASSKLSTNNLEDTIHVKNASQGDIPFSGLLQVSTSSGFAWAKRRRDSSIRSHSRSISRGLINPIEFSTSLQSRHKVDSKRHENGDICGLRTESRGRDSNENVKVGIRNQWGRLEQPDSFDASDGYHSSELSMALYIREEMEAKRNMGYQDPADKVEFSGPLLSQSHRVDELLDRHERHIRQTVRRSWFHKGKKYGK 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1233246 1238940 - Conep16aG0019400.1 Cone16ag0190 454624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0190 713 Gene3D Transferase(Phosphotransferase) domain 1 224 464 - -
Cone16ag0190 713 CDD STKc_CDK9_like 141 425 - -
Cone16ag0190 713 FunFam probable serine/threonine-protein kinase At1g54610 224 465 - -
Cone16ag0190 713 ProSiteProfiles Protein kinase domain profile. 141 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0190 713 FunFam probable serine/threonine-protein kinase At1g54610 128 223 - -
Cone16ag0190 713 PANTHER CELL DIVISION PROTEIN KINASE 140 425 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone16ag0190 713 MobiDBLite consensus disorder prediction 441 487 - -
Cone16ag0190 713 Pfam Protein kinase domain 141 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0190 713 MobiDBLite consensus disorder prediction 18 41 - -
Cone16ag0190 713 MobiDBLite consensus disorder prediction 445 476 - -
Cone16ag0190 713 SMART serkin_6 141 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone16ag0190 713 Gene3D Phosphorylase Kinase; domain 1 128 223 - -
Cone16ag0190 713 MobiDBLite consensus disorder prediction 588 615 - -
Cone16ag0190 713 ProSitePatterns Protein kinases ATP-binding region signature. 147 170 IPR017441 GO:0005524(InterPro)
Cone16ag0190 713 MobiDBLite consensus disorder prediction 589 615 - -
Cone16ag0190 713 SUPERFAMILY Protein kinase-like (PK-like) 135 431 IPR011009 -
Cone16ag0190 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0190 Cone-Chr16:1233246 Cone2ag0537 Cone-Chr2:2974503 8.78E-220 dispersed
Cone16ag0190 Cone-Chr16:1233246 Cone16ag0478 Cone-Chr16:6950291 3.08E-216 wgd
Cone16ag0190 Cone-Chr16:1233246 Cone2ag0826 Cone-Chr2:34261546 1.98E-300 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82194 PF01556 DnaJ_C 4.00E-43 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0190 - - - 0.0