Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0191 ATGTCGGACAGCGAAGAGCACCACTTCGAGTCGAAGGCCGATGCCGGAGCTTCCAAGACGTTTCCACAGCAGGCTGGTACCGTTCGCAAGAACGGCTACATAGTCATCAAAGGCCGTCCCTGCAAGGTTGTTGAAGTTTCCACCTCCAAAACTGGAAAGCATGGTCATGCTAAGTGCCACTTTGTCGGGATTGACATTTTCACTGGCAAAAAGTTTGATGATATAGTTCCCTCTTCCCATAACTGTGATATTCCTCATGTCAACCGCACTGACTATCAGCTGATTGATATTTCTGAAGATGGATTTGTGAGTCTGCTTGCTGAAAATGGGAATACCAAGGATGATCTGAAGCTCCCAACTGATGACGCTTTGCTAACTCAGATCAAGGATGGTTTTAGTGAGGGGAAGGACCTGGTTGTGACCGTGATGTCTTCAATGGGTGAAGAGCAGATCTGTGCCCTGAAGGATATTGGTCCTAAGTAA 483 47.2 MSDSEEHHFESKADAGASKTFPQQAGTVRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDIPHVNRTDYQLIDISEDGFVSLLAENGNTKDDLKLPTDDALLTQIKDGFSEGKDLVVTVMSSMGEEQICALKDIGPK 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1246812 1249203 - Conep16aG0019500.1 Cone16ag0191 454625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0191 160 FunFam Eukaryotic translation initiation factor 5A 1 86 - -
Cone16ag0191 160 PIRSF Transl_init_eIF5A 1 158 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone16ag0191 160 SUPERFAMILY Nucleic acid-binding proteins 87 157 IPR012340 -
Cone16ag0191 160 Gene3D - 87 159 IPR012340 -
Cone16ag0191 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 86 155 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone16ag0191 160 NCBIfam translation initiation factor IF-5A 19 154 IPR001884 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone16ag0191 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 158 IPR001884 GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro)
Cone16ag0191 160 FunFam Eukaryotic translation initiation factor 5A 87 159 - -
Cone16ag0191 160 MobiDBLite consensus disorder prediction 1 22 - -
Cone16ag0191 160 CDD S1_eIF5A 87 157 - -
Cone16ag0191 160 Pfam Translation initiation factor 5A-like, N-terminal 18 80 IPR048670 -
Cone16ag0191 160 Gene3D - 1 86 IPR014722 -
Cone16ag0191 160 SUPERFAMILY Translation proteins SH3-like domain 16 94 IPR008991 -
Cone16ag0191 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 51 58 IPR019769 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
Cone16ag0191 160 SMART eIF_5a_2 86 155 IPR020189 GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0191 Cone-Chr16:1246812 Cone4ag0600 Cone-Chr4:2744791 8.04E-107 dispersed
Cone13ag0928 Cone-Chr13:8066860 Cone16ag0191 Cone-Chr16:1246812 8.66E-104 wgd
Cone16ag0191 Cone-Chr16:1246812 Cone19ag0922 Cone-Chr19:7121433 4.95E-68 wgd
Cone16ag0191 Cone-Chr16:1246812 Cone2ag0825 Cone-Chr2:34254365 2.32E-115 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0191 K03263 - mdm:103423800 305.834