Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone16ag0191 | ATGTCGGACAGCGAAGAGCACCACTTCGAGTCGAAGGCCGATGCCGGAGCTTCCAAGACGTTTCCACAGCAGGCTGGTACCGTTCGCAAGAACGGCTACATAGTCATCAAAGGCCGTCCCTGCAAGGTTGTTGAAGTTTCCACCTCCAAAACTGGAAAGCATGGTCATGCTAAGTGCCACTTTGTCGGGATTGACATTTTCACTGGCAAAAAGTTTGATGATATAGTTCCCTCTTCCCATAACTGTGATATTCCTCATGTCAACCGCACTGACTATCAGCTGATTGATATTTCTGAAGATGGATTTGTGAGTCTGCTTGCTGAAAATGGGAATACCAAGGATGATCTGAAGCTCCCAACTGATGACGCTTTGCTAACTCAGATCAAGGATGGTTTTAGTGAGGGGAAGGACCTGGTTGTGACCGTGATGTCTTCAATGGGTGAAGAGCAGATCTGTGCCCTGAAGGATATTGGTCCTAAGTAA | 483 | 47.2 | MSDSEEHHFESKADAGASKTFPQQAGTVRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKFDDIVPSSHNCDIPHVNRTDYQLIDISEDGFVSLLAENGNTKDDLKLPTDDALLTQIKDGFSEGKDLVVTVMSSMGEEQICALKDIGPK | 160 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 1246812 | 1249203 | - | Conep16aG0019500.1 | Cone16ag0191 | 454625 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone16ag0191 | 160 | FunFam | Eukaryotic translation initiation factor 5A | 1 | 86 | - | - | |
Cone16ag0191 | 160 | PIRSF | Transl_init_eIF5A | 1 | 158 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Cone16ag0191 | 160 | SUPERFAMILY | Nucleic acid-binding proteins | 87 | 157 | IPR012340 | - | |
Cone16ag0191 | 160 | Gene3D | - | 87 | 159 | IPR012340 | - | |
Cone16ag0191 | 160 | Pfam | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 155 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
Cone16ag0191 | 160 | NCBIfam | translation initiation factor IF-5A | 19 | 154 | IPR001884 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Cone16ag0191 | 160 | PANTHER | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER | 1 | 158 | IPR001884 | GO:0003723(InterPro)|GO:0003746(PANTHER)|GO:0003746(InterPro)|GO:0006414(PANTHER)|GO:0043022(InterPro)|GO:0045901(InterPro) | |
Cone16ag0191 | 160 | FunFam | Eukaryotic translation initiation factor 5A | 87 | 159 | - | - | |
Cone16ag0191 | 160 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cone16ag0191 | 160 | CDD | S1_eIF5A | 87 | 157 | - | - | |
Cone16ag0191 | 160 | Pfam | Translation initiation factor 5A-like, N-terminal | 18 | 80 | IPR048670 | - | |
Cone16ag0191 | 160 | Gene3D | - | 1 | 86 | IPR014722 | - | |
Cone16ag0191 | 160 | SUPERFAMILY | Translation proteins SH3-like domain | 16 | 94 | IPR008991 | - | |
Cone16ag0191 | 160 | ProSitePatterns | Eukaryotic initiation factor 5A hypusine signature. | 51 | 58 | IPR019769 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) | |
Cone16ag0191 | 160 | SMART | eIF_5a_2 | 86 | 155 | IPR020189 | GO:0003723(InterPro)|GO:0003746(InterPro)|GO:0043022(InterPro)|GO:0045901(InterPro)|GO:0045905(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone16ag0191 | Cone-Chr16:1246812 | Cone4ag0600 | Cone-Chr4:2744791 | 8.04E-107 | dispersed | |
Cone13ag0928 | Cone-Chr13:8066860 | Cone16ag0191 | Cone-Chr16:1246812 | 8.66E-104 | wgd | |
Cone16ag0191 | Cone-Chr16:1246812 | Cone19ag0922 | Cone-Chr19:7121433 | 4.95E-68 | wgd | |
Cone16ag0191 | Cone-Chr16:1246812 | Cone2ag0825 | Cone-Chr2:34254365 | 2.32E-115 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone16ag0191 | K03263 | - | mdm:103423800 | 305.834 |