Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone16ag0203 ATGGTGCTTCCAAAAGGTTCACCTTGGGGATCCCAATATATGTGTTTGGGGGATAAAATACGGTGTGACACATGTGGTGGTAGTGCAGATCCCGACTTGATTGCAACTTGCTCCAAATGCAACTTACCTAGTGAACATCTTTATTGCATGAAGAAAGTTGTCGCTGACATCCCAGAAGGCTGGATATGTGAGTCATGCTCAGTGGATGTTGTAGTAGCAGAGGAAAATTATGGGCACATTACTTCCCCGAGTAGCCAGAACAAAATTTATCAGGAGGGATATGCACGCAATAAATGGAAAAGGCCTGGGAGAGTGAAGTTTATAACTAAGGAAGAAGTTGTGAAGTTATCCTCTGGAGCTACAAAAAGTGGAGTAGATTCGGGGTCATCATATATGCCTAAAAGGACTTCTATTAGCTATAGAACTGTCACTGAAGTGTATACTCCCACAAAGAAAAAAGAAAATCCTAATCCAGTAACATTGGAACAAGTGAAGTCTCCTACTTATTTTGGGATACAAATCAAGTCAGTCAGCAGTAATCAGCAACCTCTGCAAGCATTGAAAGCGTCTAAAGGTGGTGAGAAGTATGCCGTTGCGGAGGACAAGCAATCTATTGATGAAGAAAGAGAGCTAGCAAATCTTCTTTCGTACATTAATCTATATCGTCCTTACCTCCCCGCTTTACATGCTACATGGAAGGGAGGCTTCTTGTTTCTTGATACAGTGACAGCTGGCCAGTTCTATGGTGGGTTTCAGGCACAGCCCCCTTGTAAGGTCAAACGTAAAGCATATGAGTTTTCACAGAAACTGCCTCCAGTCCTTCAGGTTAAGATGCTTCCTCGACTCCAACTTCTGGTTGATCCTGATCTTCGCGACATTGCCTTATACTTCATCCCTTCCGGCAATATTGAAAGATCCAGACAGACCAATTGTTGGCTGTTTGACCTTATGGAGAACCAAAATTCAATGCTGAGTTGTTATACTGAGGATGTTGAGTTGCTGATATTTACAACCAAACAATTACATGTGGATTCGCAGTATGTCATGACAGCCCTGAGCACTGAATGCTTCTTGCTGGGAATCTTCCGACATGCAAAAAATCATCAGTTCCCATTGGAAGATGCAAAAGTTGGTCGAGAAAACATAAATGATGGTAATGCTGTTGACATGGAGATTGACATGTTAGGAGGACGTGATGTTGAAATAGTTAATATAGTTTCTCCGAGAAGTCCCTGTGAGAATAATTTGAAAGGAAATTCTGAGAAATCTTTGCAGATTGTAGATGCAATGTCTCCAACTATTCCAAGTAGTCTGAATTCTACAAATGACAAGCAACTGTTGGAAATTAAATGCAAACTGGAAATAGAGCCCGAGCTTCCACCCGGGCTTACCAAGAGAGATGGAATTAGTTTTTTGCTGCCATTGAGAAGCTCTCTTGGGACACCCTCCACTGCCCTGAGGAGTATGGAAACTCCTCCTGGTTTTGAGAAAAGGCCATGGAAAACTGAGAAGGAAGCTGCTCGTATTGATAACATCCCTACTTCTCAGCCATTCCAACGTCATGGGGAATCGCCGTTCTTCAATCTGACCAGCTCTCTTCCGAATAATACCAAATCCAGGAGAGTCATGGACAAATACCTCTTCCCAACTGCAGTTACCACAGAACATTACAAGAGCAGCAGCATTGTGGACTGCAGTCAGAATGCTACATGCCTGTCCCATGAACAAGTAAAACCCAACATTGAATTTCCTGTAAAACTGGAATCAACCAACAAGATCCTTAATATCAACAATTCTCGGGATTACACCCCGGTCGGAGGAGCAGAAAACACTAGACCTAGATCAAACACAGGAGGGAGATAA 1863 42.73 MVLPKGSPWGSQYMCLGDKIRCDTCGGSADPDLIATCSKCNLPSEHLYCMKKVVADIPEGWICESCSVDVVVAEENYGHITSPSSQNKIYQEGYARNKWKRPGRVKFITKEEVVKLSSGATKSGVDSGSSYMPKRTSISYRTVTEVYTPTKKKENPNPVTLEQVKSPTYFGIQIKSVSSNQQPLQALKASKGGEKYAVAEDKQSIDEERELANLLSYINLYRPYLPALHATWKGGFLFLDTVTAGQFYGGFQAQPPCKVKRKAYEFSQKLPPVLQVKMLPRLQLLVDPDLRDIALYFIPSGNIERSRQTNCWLFDLMENQNSMLSCYTEDVELLIFTTKQLHVDSQYVMTALSTECFLLGIFRHAKNHQFPLEDAKVGRENINDGNAVDMEIDMLGGRDVEIVNIVSPRSPCENNLKGNSEKSLQIVDAMSPTIPSSLNSTNDKQLLEIKCKLEIEPELPPGLTKRDGISFLLPLRSSLGTPSTALRSMETPPGFEKRPWKTEKEAARIDNIPTSQPFQRHGESPFFNLTSSLPNNTKSRRVMDKYLFPTAVTTEHYKSSSIVDCSQNATCLSHEQVKPNIEFPVKLESTNKILNINNSRDYTPVGGAENTRPRSNTGGR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 1337972 1353259 + Conep16aG0020700.1 Cone16ag0203 454637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone16ag0203 620 MobiDBLite consensus disorder prediction 597 620 - -
Cone16ag0203 620 PANTHER RING_FYVE_PHD ZINC FINGER SUPERFAMILY PROTEIN 19 205 IPR049914 GO:0034244(InterPro)|GO:0140566(InterPro)
Cone16ag0203 620 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 69 IPR013083 -
Cone16ag0203 620 SUPERFAMILY FYVE/PHD zinc finger 18 72 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone16ag0203 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0203 Cone-Chr16:1337972 Cone2ag0805 Cone-Chr2:34056154 9.65E-199 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g651 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0805 Cone16ag0203 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012737 1 4 0 1 0 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 0 1 1 1 0 28